Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l20
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21...    40   6e-04
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    26   7.4  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    26   9.8  

>06_01_0021 -
           214401-214613,214707-214790,214887-215041,215165-215234,
           215334-215509,215631-215803,216715-216938
          Length = 364

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -1

Query: 154 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 38
           AFMFES+L   + +W  ++  + D  YY+CW  L  HFS
Sbjct: 313 AFMFESALIPRVCQWALDSPSR-DLDYYQCWIGLKSHFS 350


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 304 KYNKSSCSNRYL 269
           KYNKS CSN+Y+
Sbjct: 943 KYNKSPCSNQYI 954


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 247  IFHSCTDVGTYLNN*IYCIYLQN*NN 324
            I+ +C D G + +  IY I L+N NN
Sbjct: 1353 IYIACEDCGDWFHGDIYSITLENVNN 1378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,739,044
Number of Sequences: 37544
Number of extensions: 164464
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)