Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l18
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...   273   1e-74
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom...    29   0.89 
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.1  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    27   2.7  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    27   2.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.6  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.6  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    26   6.3  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.3  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   6.3  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   8.3  
SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    25   8.3  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score =  273 bits (670), Expect = 1e-74
 Identities = 133/237 (56%), Positives = 176/237 (74%), Gaps = 1/237 (0%)
 Frame = +2

Query: 14  KPVTTPEEIAQVATISANGDTAIGKLIADAMKKVGRDGVITVKDGKTLTDELEIIEGMKF 193
           + +TT EEI+QVATISANGDT IG+L+A AM++VG++GVITVK+G+T++DELE+ EGMKF
Sbjct: 167 RDITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISDELEVTEGMKF 226

Query: 194 DRGYISPYFINSSKGAKVEFQDALVLFSEKKISNVQTIIPALEMANQQRKPLIIVAEDVD 373
           DRGYISPYFI   K  KVEF++ L+L SEKK+S VQ I+P+LE+A QQR+PL+I+AEDVD
Sbjct: 227 DRGYISPYFITDVKSQKVEFENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVD 286

Query: 374 GEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLSDMAIATGGVVFGDDANLIKIEDVQP 553
           GEAL+  ++N+L+  LQV A+KAPGFGDNR++ L D+A+ T   VF D+ + + IE  QP
Sbjct: 287 GEALAACILNKLRGQLQVVAIKAPGFGDNRRNMLGDLAVLTDSAVFNDEID-VSIEKAQP 345

Query: 554 SDLGQVGEVIIXXXXXXXXXXXXXXSDIDRRAEQIRDQIQETN-SEYEKEKLQERLA 721
             LG  G V +                ++ R EQIR  + + N +EYEKEKLQERLA
Sbjct: 346 HHLGSCGSVTVTKEDTIIMKGAGDHVKVNDRCEQIRGVMADPNLTEYEKEKLQERLA 402


>SPBC800.12c |||ubiquitin family protein,
           unknown|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 245 VEFQDALVLFSEKKISNV-QTIIPALEMANQQ--RKPLIIVAEDVDGEALST 391
           VEFQ  L LF EKK+  V +T+ P ++ A+ +   +  I+  ++V    LST
Sbjct: 44  VEFQGNLALFEEKKVHVVAKTVRPPIQQASTEINVQSTILELKEVLASQLST 95


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 636 MSDFLPLPFNSRVSSLVIITSPT*PKSDGWTSSILMRFASS 514
           + DFL LP  S   + + I S    K D W +SI  R+A +
Sbjct: 181 LHDFLALPTGSLPITPLKILSTNWTKLDSWLNSISARYAEA 221


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 214 W*NVTSIKFHTLNDFKLVGEGFSIF 140
           W N+ +I+ HTLN + LV  G   F
Sbjct: 55  WHNLINIRLHTLNTYPLVHHGVISF 79


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 290 SNVQTIIPALEMANQQRKPLIIVAEDVDGE--ALSTLVVNRLKIGL 421
           S+  T+ PA E        LI+++ + D E    STLVVN L I L
Sbjct: 179 SSFLTVKPAEEPKKLSLADLILISANTDREDGLFSTLVVNELGIAL 224


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 544  IFNFDEIRIVTKYNST-SSNSHITEGGLAVISEAWGFHCSYLQTDFQSINN 395
            I+N     IV+   +T + N  IT G L  I     F  +YL + FQ+++N
Sbjct: 928  IWNSSNSTIVSNVTATITGNVTITTGDLTTIDPTT-FTSTYLSSGFQTVSN 977


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 275 SEKKISNVQTIIPALEMANQQRKPLII 355
           SEK +S +Q +  ++E A   RKPL +
Sbjct: 708 SEKLLSTLQAVSDSIESAKANRKPLAL 734


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 167 LEIIEGMKFDRGYISPYFINSSKGAKVEFQDALVLFSEKKISNVQTIIPALEMA 328
           +E I+  K  +  + P  I + KGA +   D L LF ++ I   + +IP +  A
Sbjct: 90  VESIDRFKIKKVVVDP-LIATRKGALLVMPDYLELFVKELIPRAEVLIPNIAEA 142


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
 Frame = -3

Query: 642 LSMSDFLPLPFNSRVSSLVI-----ITSPT*PKSDGWTSSILMRFASSPNTTPPVAIAIS 478
           LS S  +P   +S  SS +      I+S + P +    SSIL    SSP++T   +++IS
Sbjct: 539 LSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSST---SLSIS 595

Query: 477 LRVDLRLSPKPGAFTAATCKPIFNLLTTKVDSASPSTSSATMIRGFLC*LAISNAGMIV* 298
                         + ++     +  +T + S +PSTSS  +    +    IS +  I+ 
Sbjct: 596 SSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSI----ISGSSSILS 651

Query: 297 TLLIFFSEKSTRASWNSTLAP 235
           + +      S+ ++++S++ P
Sbjct: 652 SSISTIPISSSLSTYSSSVIP 672


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 281 KKISNVQTIIPALEMANQQRKPLI----IVAEDVDGEALST 391
           KK  NV+T++ ALE+ N++ K  +    I  +  DG+ L++
Sbjct: 57  KKDDNVETLLSALEIQNEKSKQQVEYSFIPLKQDDGDILTS 97


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 155 LTDELEIIEGMKFDRGYISPYFIN 226
           + + L+ I+GM FD  +ISP F N
Sbjct: 71  IRNHLDYIQGMGFDAIWISPIFEN 94


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 662 DQIQETNSEYEKEKLQE 712
           D I ETNSEY+++K +E
Sbjct: 37  DGIHETNSEYDEKKREE 53


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 612 RARVRNQTLTGVLNRLETKFRRQ 680
           RA +RNQ     +NR E+K  RQ
Sbjct: 255 RAAIRNQAAQRYVNRQESKLERQ 277


>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 453 PKPGAFTAATCKPIFNLLTTKVDS 382
           PK G F  A CK +    +TK +S
Sbjct: 42  PKQGVFVCAACKELLYKASTKFES 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,442
Number of Sequences: 5004
Number of extensions: 56905
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)