Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l16
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   3.7  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    26   3.7  

>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 466 KSVKNIICDLQQCACFIQNFICNPYHLQPY*G 371
           K+VK  ICD         + ICNP  L PY G
Sbjct: 508 KTVKEAICDYNSDTSRTWD-ICNPNKLHPYSG 538


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 408 KFWIKHAHCCRSH 446
           +F ++H HCCR H
Sbjct: 64  RFIVRHIHCCRCH 76


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 511 LALHFFSSILFPLGCKSVKNIICDLQQCACFIQNFICNPYHLQPY 377
           L  +F S   F L C +V  ++C +QQC+  + +F C  + L  Y
Sbjct: 17  LQRYFHSFHCFFLLCFTV--MLCVVQQCSSAMTSFRCPTFSLSKY 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,666
Number of Sequences: 5004
Number of extensions: 46522
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)