Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20l16
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0444 + 17816207-17817436 31 0.94
07_03_0999 - 23216665-23217419,23217626-23217956 31 0.94
06_03_0334 - 19660526-19661755 31 0.94
03_01_0487 - 3704763-3705416 30 1.6
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 2.2
09_04_0337 + 16796378-16796397,16796646-16796812,16798024-167983... 29 2.9
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961... 29 2.9
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 6.7
04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947 28 6.7
03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289 27 8.8
>11_04_0444 + 17816207-17817436
Length = 409
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 248 EQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 346
EQ W+ + +FNS++ R P Q R W+N+K
Sbjct: 191 EQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 248 EQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 346
EQ W+ + +FNS++ R P Q R W+N+K
Sbjct: 122 EQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 156
>06_03_0334 - 19660526-19661755
Length = 409
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 248 EQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 346
EQ W+ + +FNS++ R P Q R W+N+K
Sbjct: 191 EQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225
>03_01_0487 - 3704763-3705416
Length = 217
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 248 EQAWQTLVNDFNSSIRR--FPRTPSQLRLKWENLKNATA 358
E W+ + ++FNS++ R RT Q++ W+N+K A
Sbjct: 122 EYYWKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKRDIA 160
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 491 RKEMQG*HRDNALAEYLIAKKRLDLENKEKEIVVAKVKL 607
+KE G + L E IAKK+L+L+ K+ E++ K ++
Sbjct: 283 KKEQSGFLKKMTLCEKSIAKKKLELDKKQPELLRLKEQI 321
>09_04_0337 +
16796378-16796397,16796646-16796812,16798024-16798339,
16798413-16798494,16798927-16799019
Length = 225
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +2
Query: 248 EQAWQTLVNDFNSSIRRF----PRTPSQLR-LKWENLKNATAT*ETTLVRLEVVRIADEI 412
E W +V D +R F P QL+ L+W +N T TL+ + V +A
Sbjct: 156 EPLWLAVVRDITWGLRSFLAFLAEQPRQLKHLEWPGFRNTLRTATLTLILVAVFIVALSS 215
Query: 413 LDKA-CTLL 436
+D A C +L
Sbjct: 216 VDAALCYIL 224
>03_02_0581 -
9617039-9617936,9618057-9618502,9618985-9619071,
9619276-9619416,9620220-9620411,9620491-9620652,
9621116-9621199,9621329-9621706
Length = 795
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 581 PFLYFPSQVSFLLLDILLMHCPYASLA 501
PF P SF+L L+M CPY S++
Sbjct: 739 PFYATPMACSFVLRTCLVMECPYGSVS 765
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 235 VCGICCLIIEMFFRRHKFC*NHRLIFCHGC 146
+C C L + +RH C N L+FCH C
Sbjct: 733 MCSGCRLPFNLRRKRHN-CYNCALVFCHAC 761
>04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947
Length = 417
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -2
Query: 511 LALHFFSSILFPLGCKSVKNI-ICDLQQCACFIQNF 407
LAL FF+ ++ +G S+ N+ +C L CAC+++ F
Sbjct: 344 LALPFFADLMALVG--SMLNVAVCMLLPCACYVRIF 377
>03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289
Length = 198
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 374 LVRLEVVRIADEILDKACTLL*VTYNIFNTFTAKRKQDGRKEMQG*HRDNALAEYLIAKK 553
L R + R+AD K V + AK++ D + + +G H++N + + I +
Sbjct: 23 LTRYVLPRLADNKYSKQYKDFIVASRLIVHIHAKKELDSKLKKRGSHKENEVIQEAIYTR 82
Query: 554 RLDLENKEKEIVVA 595
D++ K V+
Sbjct: 83 AEDMKEAVKHFAVS 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,495
Number of Sequences: 37544
Number of extensions: 298891
Number of successful extensions: 577
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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