Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l15
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.2  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.8  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -3

Query: 346 FSIQMGCF*STQKCISHSKSFRHNFINIRYINNFVVNETPNFIKDCVFRLETPSS*IILK 167
           +S Q+    S     +H +S    F    Y+ N V+  +P  I      L T  +   + 
Sbjct: 73  YSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSPKIISFTSLFLATKCNDHYIS 132

Query: 166 FERFCKD 146
            E+FCK+
Sbjct: 133 IEQFCKN 139


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +2

Query: 338 NAEGMQSYIDRYGETIYRVSNEMGPAPR--MTTNKSRNSVCEQLEKLVPIEKLQDRRNWR 511
           N+E ++S +D   + I ++ NE+    R  +    S  ++ E+ +K   I+KL D  + +
Sbjct: 370 NSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQK--NIKKLNDAESLK 427

Query: 512 DLCLMRLSLLKKEMNKKYQSS 574
              L   + ++ E++    S+
Sbjct: 428 SRLLQSRTQMQTELDSYITSN 448


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 40  CVYCVSCRAWSVWLLTFLWLRSNVNVEHYFSGIFNNLYKISQI 168
           CVY  S    S  L +F +++S+ +   YF  +F+ L  IS +
Sbjct: 680 CVYDPSNVGHSFALASFPYVKSHYDAHKYFPIVFDVLMNISNM 722


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 332 HLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPI 481
           H   +  Q+Y+    E + R+ NE+    R+ T+     V ++ E  V I
Sbjct: 123 HRQLQTAQNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKI 172


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
 Frame = -2

Query: 482 QSVLTSPIVRTPSFCFYLSSYAEPVPFH----C*H---DKLSLRIYQYN-FACLQHSNGL 327
           +++   PI+R  +F  +++SY   +P H    C H   D+L++    ++   C+   +  
Sbjct: 687 RNIAIPPILRLVAFGLFITSYI--IPSHHIRSCKHYFLDRLAILFLTFSPTMCMLSISFE 744

Query: 326 FLEHPKMHISFQV---LPT*LYQYP--LHQQLCRQRDAKLHQGL 210
            L +  + I+  +   L T L +Y   LH +  R++DAK H  L
Sbjct: 745 ALFYVVLFITLGLWMELETELQKYTEQLHPEYSRKKDAKFHLSL 788


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 KRPRPKSFLNLRDFVKI-IKYARKVMLNVHIASKPQKRKKPYTPSSTRYTIYTLL 34
           KR +  SFL +     + +   RK++L V +         PYT   ++Y IYTLL
Sbjct: 79  KREKLHSFLEIGQIPHLKLSKTRKIVLEVVL--------DPYTERESKYHIYTLL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,167
Number of Sequences: 5004
Number of extensions: 54043
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)