Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l15
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    29   3.0  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    29   3.0  
03_06_0604 - 35006004-35008580                                         29   4.0  

>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 521 NKDRANYDDLEVFQSVLTSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQ 342
           N+ R+ +D      + L   I +  +FCFY   + +P P +   D  + +     F   +
Sbjct: 145 NRQRSFHDSWFKMHNWLEYSIAKDAAFCFYCYLFKQPRPDNFGVDAFTSK----GFTNWK 200

Query: 341 HSNGLFLEH 315
           H+ G F EH
Sbjct: 201 HATGSFNEH 209


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 521 NKDRANYDDLEVFQSVLTSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQ 342
           N+ R+ +D      + L   I +  +FCFY   + +P P +   D  + +     F   +
Sbjct: 321 NRQRSFHDSWFKMHNWLEYSIAKDAAFCFYCYLFKQPRPDNFGVDAFTSK----GFTNWK 376

Query: 341 HSNGLFLEH 315
           H+ G F EH
Sbjct: 377 HATGSFNEH 385


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -2

Query: 470 TSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQHSNGLFLEHP 312
           TSP+ R PS  F LS+ A+P    C   K+ L+    N   LQ  N  FL +P
Sbjct: 296 TSPVCRCPSENFQLSNPADP-RGGC-RRKIELQNCPGNSTMLQLDNTQFLTYP 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,323
Number of Sequences: 37544
Number of extensions: 297383
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)