Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l13
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.30 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.30 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.4  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 284 PLY*DQFHKRAGFRQVGSRAPSSIAASTRRPSGPR 180
           P Y  QFH +  F+   + AP++ ++S+   S P+
Sbjct: 12  PKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQ 46


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 284 PLY*DQFHKRAGFRQVGSRAPSSIAASTRRPSGPR 180
           P Y  QFH +  F+   + AP++ ++S+   S P+
Sbjct: 12  PKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQ 46


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 473 NSALSRSYSPRLLYQLSTVQGDTVGGIHRNEL 378
           +S   +  +PR   +L  V GD   G H N L
Sbjct: 172 DSKKKKGPTPRQQEELCLVCGDRASGYHYNAL 203


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 227 HGIRPDGTLPACE 265
           HGI+P  TLP+ E
Sbjct: 169 HGIQPSPTLPSKE 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,947
Number of Sequences: 336
Number of extensions: 2729
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)