Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20l12
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 31 0.50
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 1.5
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 29 2.0
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 28 3.5
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 28 4.7
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 4.7
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 216 DKELIDSQNARLFIIQKYDELCNKINF---LTELDSTFNGFRRDVKSIEQQVCELSQRVD 386
+++L D A I ++YDE C ++ E + + R VK + ++ QR+D
Sbjct: 528 ERKLYDEVKASGAICRQYDEKCRQLRHQESKAESQMSIDRTRATVKDLHSRIIVAIQRID 587
Query: 387 SIEKRI 404
I K I
Sbjct: 588 MISKNI 593
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 273 ELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVDSIEKRII 407
E+C+ + LD N F R K EQ+ EL+ R+D+ EK+I+
Sbjct: 1722 EMCSVLKGKLLLDINHN-FSRIAKK-EQEATELNSRLDAFEKKIL 1764
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 237 QNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRV-DSIEKRI 404
++ +LF+++ D N + EL ++ R I Q +C LSQ V D I K +
Sbjct: 1809 RSGKLFLLKLLDSAVNDKDISRELYKKYSSVHRRKVRIWQMICVLSQYVEDDIVKEV 1865
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +3
Query: 204 VNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRV 383
V +++KE++DS+ F K EL I + + D+ FN + + +++V L+ +
Sbjct: 565 VQELEKEILDSREKTEFYRTKMQEL---ILYKSRCDNRFNEVSERMSADKREVQSLAAKY 621
Query: 384 DSIEKRI 404
D K++
Sbjct: 622 DERCKKV 628
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 174 SKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDST 317
S I + V+K++KE+++++ IQ +E C K+ E D++
Sbjct: 450 SDLSSILVKHVSKLEKEILEAKKNNNTRIQLLEESCKKVEAHVEKDAS 497
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +3
Query: 189 IKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCE 368
++ ++NK DKE D +N + ++ L + L + +K I+ E
Sbjct: 160 LRTNVINKGDKEFADGKNKIKYSLRIARFLLPWLKQLHQEQMLEKSVEATIKGIDVTDLE 219
Query: 369 LSQRVDSIEKRIICKEC 419
+ Q + ++RI C C
Sbjct: 220 VPQAQFNNDERIYCDNC 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,605,019
Number of Sequences: 37544
Number of extensions: 120993
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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