Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l09
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    29   0.71 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.6  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    27   2.9  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   3.8  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   6.6  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    25   6.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   6.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.8  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   8.8  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 496 IEPINMVALSLLAPVTS*C*VGCEVTQPY 582
           +  I++VA+  LAP+ S C +GC +T  Y
Sbjct: 157 VADISVVAIERLAPLDSVCLLGCGITTGY 185


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 352 CHDPVFRPH-MYCCSCCPERDHGEC 281
           C   +  PH + CC+ CP+RD   C
Sbjct: 238 CKKCLLAPHEVICCAFCPDRDGAFC 262


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 496 IEPINMVALSLLAPVTS*C*VGCEVT 573
           +  I++VA+S  AP+ S C +GC VT
Sbjct: 154 VADISLVAISHSAPLRSICLLGCGVT 179


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 384 CIVSKSCN---WFVVMTQFFGLICTVVLAALNGITGN 283
           C++S   N   WF++   FFGL   ++L A      N
Sbjct: 328 CLLSDRTNIRGWFIIGMNFFGLAGFIILLATTNSAAN 364


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 365 HDLETIQRNIPIDKFQKHIYVILFVLRSCHVLPFERW 475
           HDL+T+  N+P D  Q  +  ++  L +        W
Sbjct: 157 HDLKTLLDNMPEDFLQSEVKTLMLQLLAATAFMHHHW 193


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 521 NATIFMGSMHMHDDFPIFQTV 459
           NA + M + HMHD   IF+ V
Sbjct: 82  NAKMIMSNTHMHDSTTIFKDV 102


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 425 HKYVFEIYLLECSVVSSLSRVTGSLS 348
           H Y+FE  LL C  +S+L R   S+S
Sbjct: 451 HVYLFEKILLCCKEMSTLKRQARSIS 476


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 115 ALAKQIVASPVAGQLSKMVRRAASIFNREFGRYPN 219
           + AK   ++    Q+S+ VR+  SIFN  F  Y N
Sbjct: 621 SFAKSDSSNATESQISESVRKGISIFNLLFIVYKN 655


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 75  LCPNEKGWRENINQTN 28
           LC N++ WR NI+Q++
Sbjct: 259 LCANKRSWRLNISQSS 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,788
Number of Sequences: 5004
Number of extensions: 51318
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)