Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l09
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    31   0.97 
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   5.2  
06_03_0784 - 24557089-24557198,24557296-24560725                       28   6.8  
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782...    27   9.0  

>11_06_0506 -
           24380469-24380632,24381737-24383893,24384488-24384541,
           24384543-24384597,24384914-24384916,24385192-24385231,
           24385576-24385632,24388124-24388412,24389764-24389771,
           24390633-24390688,24391207-24391488,24391651-24391811,
           24391887-24392121,24392860-24392943,24393022-24393117,
           24393333-24394055,24396523-24396987
          Length = 1642

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 223 HPGYDIQDAKRRSSKLIVED--IPRDPVQGSKNNSTYEAEKLGHDNEPVTRLRDDTTEHS 396
           HP   + DA  R+ ++I +    P+  V  ++ N  +    L  +NE VT L  +   HS
Sbjct: 151 HPDEKVVDASARALRMIYQSKLAPKFDVNNNEKNMEFLLTLLNSENENVTELAANIISHS 210


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -2

Query: 342  QFFGLICTVVLAALNGITGNVLNNQF*RASFSILNIVSRMIIRVPSELPIEDTGCSAHHL 163
            +F  L+C  +L+A +      + +   +A   +    ++M++ V SELP  +     H +
Sbjct: 1842 RFRELVCKHILSATDNSNSEKVPSGTGKAILKVSEDQTQMLLNVISELPNNELLLQKHFM 1901

Query: 162  TQLSSHRRS 136
              LSS  RS
Sbjct: 1902 AVLSSVWRS 1910


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 198 PIEDTGCSAHHLTQLSSHRRS 136
           P+ D+ CS HHL  LS H  S
Sbjct: 628 PLSDSLCSLHHLRMLSVHPHS 648


>12_02_0645 +
           21475126-21475293,21475386-21475538,21478101-21478249,
           21478449-21478526,21478604-21478697,21478920-21478994,
           21479341-21479637,21479722-21479789,21479876-21479930,
           21480137-21480275,21480439-21480623,21480748-21481119
          Length = 610

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 604 DLQAFISHMAELLHSLPSIKRLLEPIKITLPYLWAQ 497
           DL+AF+S +++L   LP I+ L   +K T+  L +Q
Sbjct: 169 DLEAFVSKISKLHPDLPVIQGLAVEVKKTIQSLISQ 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,984
Number of Sequences: 37544
Number of extensions: 310101
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)