Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l09
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    31   0.66 
U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   3.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   3.5  
U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
 Frame = +2

Query: 185  VSSIGSSEGTLIIILDTIFKMLNDALQN*LLRTFPVIPFRAARTT-------VHMRPKNW 343
            V+++GS + T +++   IF    D+L+  ++        RA + T         +   +W
Sbjct: 939  VANVGSLQITAMLLASNIFSRAEDSLRFSMITDLLSSLHRAPQFTQKNSNNGYSLPDGSW 998

Query: 344  VMTTNQLHDLETIQRNIPIDKFQKH 418
            + TT  L  ++ +Q  I I KF+KH
Sbjct: 999  ISTTTALF-IQLVQSTIKIPKFKKH 1022


>U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical
           protein T02C5.1b protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 204 ELPIEDTGCSAHHLTQLSSHRRSYDLLSQSLHVVYIS 94
           ELPI+D      +L  + S+  +YD+   SL  VY S
Sbjct: 121 ELPIKDNFIKGENLEMIDSNEINYDMARNSLEDVYDS 157


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 347  MTTNQLHDLETIQRNIPIDKFQKHIYVILFVLRSCHVLPFER 472
            + T+ +H     Q+  PI + +    V+  +   CH+LP E+
Sbjct: 1353 LETSNIHATSPAQQVTPIVQMRNQADVLTNIYNGCHILPIEQ 1394


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 347  MTTNQLHDLETIQRNIPIDKFQKHIYVILFVLRSCHVLPFER 472
            + T+ +H     Q+  PI + +    V+  +   CH+LP E+
Sbjct: 1353 LETSNIHATSPAQQVTPIVQMRNQADVLTNIYNGCHILPIEQ 1394


>U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical
           protein EEED8.6 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 EFGRYPNYHPGYDIQDAKRRSSKLIVEDIPRDPVQGSK 312
           E  +YP +H    +Q  ++R   LI  D   D  QGSK
Sbjct: 157 ESRKYPFFHRDLLVQTVQKRRVDLITIDATPDTFQGSK 194


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +2

Query: 350 TTNQLHD-----LETIQRNIPIDKFQKHIYVILFV 439
           TTN LH      LE + +N   DKF++H ++ +F+
Sbjct: 107 TTNTLHRREGVVLEVVAKNEKSDKFERHKWIAIFL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,681
Number of Sequences: 27780
Number of extensions: 283642
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)