Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l08
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0283 + 2083627-2084334,2085759-2085986                           38   0.007
09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178...    31   0.99 
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253...    28   7.0  
01_06_1139 + 34835430-34835883,34836377-34836855                       28   7.0  

>06_01_0283 + 2083627-2084334,2085759-2085986
          Length = 311

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 23/109 (21%), Positives = 51/109 (46%)
 Frame = +1

Query: 166 EQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSKDQTFRNYVHYLSD 345
           + P    ++    L +  R    FL ++G  L+ + +  F+ ++   +  +  ++  L  
Sbjct: 29  DPPPSAPDRKAALLALLSRDAPLFLERYGGSLSRDELAAFDALAGDYEVGW--HLRRLRA 86

Query: 346 YHSETSRRKRIKNRRYKALQKMKIKTDYFSEKQMMYRNPLLYEQLVGQY 492
                    R++NRR   L ++  + +YFSE+ M  R P L+ + +G++
Sbjct: 87  ASEGGPSASRVRNRRRAYLDRLVREGEYFSEEAMREREPYLHHEYLGRF 135


>09_04_0288 +
           16416409-16416603,16417584-16417635,16417842-16417890,
           16418354-16418497,16418730-16418783,16418883-16418948,
           16419174-16419252,16419390-16419467
          Length = 238

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 127 RSANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSK 306
           R +++SF+       P+  C +    +E++     E   Q G   + NH KY     SSK
Sbjct: 41  RVSSVSFRR-RPPASPLVRCSQDPGKIEVFNTEGTE-QSQGGSTGSINHGKYSTRSFSSK 98

Query: 307 DQTFRNYVHYL 339
           D     Y HYL
Sbjct: 99  DANITTYNHYL 109


>06_03_0540 -
           21923763-21923945,21924027-21924776,21924895-21925323,
           21925509-21925619,21925715-21926040,21926130-21926251,
           21926905-21927020,21927119-21927243,21927338-21927596
          Length = 806

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +1

Query: 397 ALQKMKIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNLILETVDH 576
           A +K+K+ +   +E+    ++ L  E+L+ Q + DE+ +  + +TE      L  +    
Sbjct: 350 AKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFS 409

Query: 577 NHMREV 594
            H  E+
Sbjct: 410 KHKAEI 415


>01_06_1139 + 34835430-34835883,34836377-34836855
          Length = 310

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 187 EKLQMALEIYKRSPVEFLMQFGKYLAPNHIK-YFENISSSKD 309
           +++++ +E+Y+R PV FL +  +  A   +K YF+  S  KD
Sbjct: 69  QQMELTVEVYRREPV-FLREHLQGTAVIQMKEYFDKFSQGKD 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,852
Number of Sequences: 37544
Number of extensions: 229509
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)