Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20l07
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.1
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 28 1.5
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 4.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.6
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 4.6
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 25 8.0
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 25 8.0
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 8.0
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/105 (21%), Positives = 46/105 (43%)
Frame = +1
Query: 325 DMITEGSREHSSFDVVLSNWLPPHSVSHSDXXXXXXXXXXXPNGKLILKDLNKLTSTLKL 504
D++ S +S + S WLPP S+S++ NG L +++ +++L L
Sbjct: 353 DLLRAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTSSADNGVYELVNVSSRSNSLPL 412
Query: 505 NGFVNVTELENNRYVAEKPKFEVGSKSSLKLNGKATVWKLDSTVE 639
N+ ++ + +F V S+S + K K+ T++
Sbjct: 413 KD--NIKGPGDDAIFVARNRFAVFSRSDQTIEIKDLSNKVTKTIQ 455
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 133 FRYLLFKKYCKIIVKNPWLTNMDNLK---NGDNVLI-IWKNDSQGNITSLIEDVKKVIQS 300
FRY L ++ ++ ++N W+ + N N N I WK +S T ++ V+K+I
Sbjct: 592 FRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYY 651
Query: 301 DT 306
T
Sbjct: 652 TT 653
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 205 LKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMI 333
LKN VL K +GN L+E+ +V S ++L++ D+I
Sbjct: 115 LKNSSEVLTASKLTDEGNSKPLLEE-GEVAVSSPILLDSKDVI 156
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 136 RYLLFKKYCKIIVKNPWLTNMDNL----KNGDNVLIIWKNDSQGNITSLIEDVKKVI 294
RY+ ++ C +I + +TN++ L +G+ +L I T L D+K I
Sbjct: 305 RYISLQEVCSVIAQQLQITNLEALNKLSSHGETLLQIMHTAFTWRGTKLFNDIKHAI 361
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +1
Query: 172 VKNPWLTNMDNLKNGDNVL---IIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 342
++ PW+ N D+ + +N+L NDS+ +T +++ + + +SD +G
Sbjct: 160 IRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDH-DDG 218
Query: 343 SREHSSFD 366
S D
Sbjct: 219 ENSDSKLD 226
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 169 IVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSR 348
I+KN + D L +G IWK D + I+ ++ + TV + NS T GS+
Sbjct: 499 IIKNFMIQGGDPLGDGTGGESIWKKDFEDEISPNLKHDRPF----TVSMANSGPNTNGSQ 554
Query: 349 EHSSFDVVLSNWL 387
+ D L+ WL
Sbjct: 555 FFITTD--LTPWL 565
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 22 FIIVHYL*SFT*ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVKNPWLTNMD 201
F + YL SFT + LG LP+ +++ +L L + LL C I + N+
Sbjct: 170 FFVALYLLSFTPRTPPKLGYLPVPSFIYSTGEL-PLSYPTLL-AVLCGPICLAKQIINVV 227
Query: 202 NLKNGDNVLI 231
L N N L+
Sbjct: 228 QLVNAANALV 237
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 202 NLKNGDNVLIIWKNDSQGN 258
+LK GD + I+ K D+QGN
Sbjct: 243 SLKKGDIIAILSKTDTQGN 261
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LIEDVKKVIQSDTVVLENSDMI 333
++ D++ ++S+ VVLE SD++
Sbjct: 280 ILSDIRSKLESERVVLEQSDLL 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,802
Number of Sequences: 5004
Number of extensions: 57219
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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