Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l06
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417           31   0.51 
04_01_0187 - 2153546-2154520,2154581-2155858                           31   0.51 
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    31   0.67 
04_03_0504 + 16616026-16616137,16616613-16616768,16616884-166170...    30   0.89 
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    29   1.6  
10_08_0188 - 15596062-15597084,15597513-15597791                       27   8.3  
08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042     27   8.3  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    27   8.3  

>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
          Length = 447

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 197 TIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNEMSCL 343
           T+I  ++ E  I+DP I +++ + ++RG  +G L+ E+G   L E  C+
Sbjct: 60  TLIDQVR-EAQINDPDI-QEIKKNMRRGKAIGFLEDEQGTVWLGERICV 106


>04_01_0187 - 2153546-2154520,2154581-2155858
          Length = 750

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 197 TIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNEMSCL 343
           T+I  ++ E  I+DP I +++ + ++RG  +G L+ E+G   L E  C+
Sbjct: 330 TLIDQVR-EAQINDPDI-QEIKKNMRRGKAIGFLEDEQGTVWLGERICV 376


>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
            3914729-3914823,3914854-3915213
          Length = 1428

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 197  TIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNEMSCL 343
            T+I  ++ E  I+DP I +++ + ++RG  +G L+ E+G   L E  C+
Sbjct: 953  TLIDQVR-EAQINDPDI-QEIKKNMRRGKAIGFLKDEQGTVWLGERICV 999


>04_03_0504 +
           16616026-16616137,16616613-16616768,16616884-16617045,
           16618152-16618480
          Length = 252

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 158 IKKLMKNTGWTTRTIIKFIKL--EYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNE 331
           ++ +M +   T  T+++ +KL   + +  P +N +    L + V L +L+ME+ R  L +
Sbjct: 86  LQVIMMSAETTMSTMMRCVKLGARFLVKKP-LNEETVGNLWQHVDLKVLKMEKIRELLQD 144

Query: 332 MSCLARKVNSHEARKRYRPKLRA 400
            +    +VNS EA+K    K+++
Sbjct: 145 ENNEEEEVNSFEAKKADSVKVQS 167


>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 221 EYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNEMSCL 343
           E  ++DP I +++ + ++RG  +G ++ E+G   L E  C+
Sbjct: 353 EAQVNDPDI-QEIKKNMRRGKAIGYIEDEKGTVWLGERICV 392


>10_08_0188 - 15596062-15597084,15597513-15597791
          Length = 433

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 344 ARKVNSHEARKRYRPKLRAKTLR 412
           ARK  S +ARKR+R  ++A++L+
Sbjct: 408 ARKNKSQQARKRWRKPVKARSLK 430


>08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042
          Length = 418

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 157 CRQNDLPRVECIIYFSHYTYTVLFINILEG 68
           CR  +LPR+E  I F+    T +   ILEG
Sbjct: 229 CRIGELPRLEHAIVFASAIKTEVLCKILEG 258


>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
            27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 221  EYSISDPKINRKVSRTLKRGVRLGLLQMERGRYRLNEMSCL 343
            E  ++DP I +++ + ++RG  +G +  E+G   L E  C+
Sbjct: 1298 EAQVNDPDI-QEIKKNMRRGKAIGYVVDEQGTVWLGERICV 1337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,107,671
Number of Sequences: 37544
Number of extensions: 222110
Number of successful extensions: 406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)