Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l06
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical pr...    38   0.004
AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1 ...    38   0.004
X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1 prot...    38   0.005
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    30   0.80 

>Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical
           protein M163.3 protein.
          Length = 208

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
 Frame = +2

Query: 143 IVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGV-RLGLLQM--- 304
           ++  AIK+L    G + + I+KFI   Y + D   +IN  + + LKRGV    L+Q    
Sbjct: 44  MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103

Query: 305 -ERGRYRLNEMSCLARK 352
              GR+R+ E +  A+K
Sbjct: 104 GANGRFRVPEKAAAAKK 120


>AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1
           protein.
          Length = 208

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
 Frame = +2

Query: 143 IVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGV-RLGLLQM--- 304
           ++  AIK+L    G + + I+KFI   Y + D   +IN  + + LKRGV    L+Q    
Sbjct: 44  MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103

Query: 305 -ERGRYRLNEMSCLARK 352
              GR+R+ E +  A+K
Sbjct: 104 GANGRFRVPEKAAAAKK 120


>X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1
           protein.
          Length = 208

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 146 VLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGVRLGLLQMER--- 310
           +  AIK+L    G + + I+KFI   Y + D   +IN    + LKRGV    L   R   
Sbjct: 45  IKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSG 104

Query: 311 --GRYRLNEMSCLARK 352
             GR+R+ E +  A+K
Sbjct: 105 ANGRFRVPEKAAAAKK 120


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 116 INNTFNTGEIVLSAIKKLMK-NTGWTTRTIIKFIKLEYSISDPKIN--RKVSRTLKRGVR 286
           +N T + GE V+S    LM  N+  + R+ IKF K EY ++  K+N    V+ T + G +
Sbjct: 398 LNVTASDGENVVSTALHLMTANSEESCRSPIKFEKFEYKMTIGKLNVLGVVNATSRTGTK 457

Query: 287 LGLLQM 304
           +  + M
Sbjct: 458 ITYILM 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,878,128
Number of Sequences: 27780
Number of extensions: 212633
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)