Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l04
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16TS6 Cluster: Putative uncharacterized protein; n=1; ...    48   2e-04
UniRef50_A1SLY5 Cluster: Inner-membrane translocator precursor; ...    35   2.0  
UniRef50_Q97LV0 Cluster: Predicted ATP transporter permease comp...    34   2.7  
UniRef50_A3T260 Cluster: Putative uncharacterized protein; n=5; ...    34   2.7  
UniRef50_Q64X84 Cluster: Type III restriction-modification syste...    34   3.6  
UniRef50_O28801 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  

>UniRef50_Q16TS6 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 313

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 31/117 (26%), Positives = 56/117 (47%)
 Frame = +2

Query: 305 SDRVHDVSWPYLRRFLILKKTYKQRFNEERLERIDRMIEAANATCYSKLANCVIXXXXXX 484
           S R+  ++ P +R+ +  +  Y++  N    +R  + I+ +  T YS+LAN  +      
Sbjct: 91  STRIQQLALPKVRKLIAARDAYRRFINRCWYDRFGKRIKRSMFTVYSRLANVNLPSSESK 150

Query: 485 XXXXXXXXGWTESEWKKHMDYISQIAGPKRDFRPPPAKRGQSKPLEALLPRLMQISS 655
                     T  +WK+H  ++S+ A PK   + P  K  +  PL  LL R+M +S+
Sbjct: 151 MVK------MTPEQWKQHQQWLSKNALPK-PLKKPERKPRKRVPLIQLLDRVMDLSA 200


>UniRef50_A1SLY5 Cluster: Inner-membrane translocator precursor;
           n=1; Nocardioides sp. JS614|Rep: Inner-membrane
           translocator precursor - Nocardioides sp. (strain
           BAA-499 / JS614)
          Length = 340

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -2

Query: 237 SIMYFLGTLSMFKRLAILY-GKVLVGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIF 61
           +++  LGT S+FK + I Y G V +  ++   PI+ +  A L  + GGG+   L++M+I 
Sbjct: 124 TLIVTLGTQSIFKGVLIAYIGSVYIASADLPTPINDLSGAHLVEVSGGGY---LHFMIIP 180

Query: 60  IFI 52
           + I
Sbjct: 181 VAI 183


>UniRef50_Q97LV0 Cluster: Predicted ATP transporter permease
           component; n=1; Clostridium acetobutylicum|Rep:
           Predicted ATP transporter permease component -
           Clostridium acetobutylicum
          Length = 832

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = -2

Query: 276 IPLGV*AGIPSPVSIMYFLGTLSMFKRLA----ILYGKVLVGGSNFGLPISVVKSAVLRV 109
           IPLGV  GI + + I++ + TLS F         +  +V+V    FG+ + ++ S+++ V
Sbjct: 317 IPLGVLCGIAA-IKILFLIVTLSKFSMFVDINIYISSRVIVSSIIFGV-LCIIFSSIVPV 374

Query: 108 IKGGG 94
           IK GG
Sbjct: 375 IKSGG 379


>UniRef50_A3T260 Cluster: Putative uncharacterized protein; n=5;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Sulfitobacter sp. NAS-14.1
          Length = 1214

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 219 GTLSMFKRLAILYGKVLVGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIFIFIFVLK 40
           GTLS FK L IL+G +L     F L   ++  +    +    W +L ++ +  IF+++  
Sbjct: 156 GTLSFFKSLYILFG-ILSLWYAFHLREDIISGSFFEPLALSNWLNLSSFAIAAIFLWMTL 214

Query: 39  FRHFVGRYG 13
              +V  +G
Sbjct: 215 HHFYVASFG 223


>UniRef50_Q64X84 Cluster: Type III restriction-modification system
           restriction subunit; n=2; Bacteroides fragilis|Rep: Type
           III restriction-modification system restriction subunit
           - Bacteroides fragilis
          Length = 1010

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 266 PRGIRKSALNSQLS-DRVHDVSWPYLRRFLILKKTYKQRFNEERLERIDRMIEAAN 430
           P   RKS +N +LS D++ +     L + L  K TY  +F+E+ L  ++R IE+ N
Sbjct: 693 PNDARKSKINLRLSKDKLENSKLQELLKLLCSKSTYTVKFDEKEL--VERAIESLN 746


>UniRef50_O28801 Cluster: Putative uncharacterized protein; n=1;
           Archaeoglobus fulgidus|Rep: Putative uncharacterized
           protein - Archaeoglobus fulgidus
          Length = 447

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
 Frame = -2

Query: 288 ADFLIPLGV*AGIPSPVSIMY------FLGTLSMFKRLAILYGKVLVGGSNFGLPISVVK 127
           A   + +G+   IP  +S+++      FLG      RLA+ YG ++V GS F L  S V 
Sbjct: 92  ATLAVAMGILVSIPMTLSVVFLNGVMVFLGADGEILRLAVDYGSIMVLGSVF-LVFSNVS 150

Query: 126 SAVLR-------VIKGGGWCSLLNYMLIFIFIFVLKF 37
           + +L         +      SLLN +L  IFI++L +
Sbjct: 151 AGILNGEGNARMAMYANAAGSLLNMVLDPIFIYLLGY 187


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,281,166
Number of Sequences: 1657284
Number of extensions: 14505774
Number of successful extensions: 35990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35983
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)