Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l04
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    29   3.9  
U29382-3|AAG00001.1|  147|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -2

Query: 240 VSIMYFLGTLSMFKRLAILYGKVLVGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIF 61
           V IM FLG   M  R+A   G + +      L I  V+    +V     W S++  +L+ 
Sbjct: 129 VLIMPFLGITGMVGRIAKHIGPITIVPMLMLLCIGTVQDIEQKV--SHHWISIVEILLLI 186

Query: 60  IFIFVLK 40
           IF+ +L+
Sbjct: 187 IFVVLLE 193


>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 177 KVLVGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIFIFIFVLKFRHFVGRYGF 10
           K  +   N+   +  ++S +++++  G  C+L  + + FI  F LK   F+GR  F
Sbjct: 225 KPQISPQNYQKHVEAIQSLIVQMLVAG-LCALPLFGVAFILAFQLKNGQFIGRIMF 279


>U29382-3|AAG00001.1|  147|Caenorhabditis elegans Hypothetical
           protein R03H10.5 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 398 ERIDRMIEAANATCYSKLANCVIXXXXXXXXXXXXXXGWTESEWKK 535
           + +D +IE+   T YS+ A C+                WTESE  K
Sbjct: 28  DMLDTLIESPETTLYSEGAGCIRNVTCQVDSYPVIHFMWTESEIPK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,945
Number of Sequences: 27780
Number of extensions: 347187
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)