Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l03
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-2|CAA87380.1|  253|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    29   3.8  
U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   8.9  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z47075-2|CAA87380.1|  253|Caenorhabditis elegans Hypothetical
           protein E02H1.5 protein.
          Length = 253

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 438 SSNPLDNLDFSSQAFKAGVNRVCTVASIGP-HPDPKIRLAA 557
           S NPL+ LD+SS  F      +C++  I   HPDPK+ + A
Sbjct: 119 SQNPLNRLDYSSPNFAENARALCSILGISAHHPDPKVLMKA 159


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 27  LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 200
           +VN  K   T+    T     + N  + K+  L         C +E    +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687

Query: 201 KIRHYKIEDREGLRNID 251
           K+RH +++++   + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 27  LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 200
           +VN  K   T+    T     + N  + K+  L         C +E    +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687

Query: 201 KIRHYKIEDREGLRNID 251
           K+RH +++++   + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 528 HPDPKIRLAALAKVLKTSPHPEPL 599
           HPDP I + A+A V+  +P P P+
Sbjct: 786 HPDPVISMNAMASVIPGAPLPAPV 809


>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 60  YLKTYSFLTMSNLFKLKLS-ALGH-PNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDRE 233
           Y  T S   ++N  K +LS A+    + +  N E +K  R+VV WL+        ++   
Sbjct: 118 YRSTRSVEALTNFVKFQLSTAINEFSSQDQLNQEMDKSKRNVVAWLKKDGPEFANLKKVA 177

Query: 234 GLRNIDSDFW 263
            +   D  FW
Sbjct: 178 SILREDCSFW 187


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 33  NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 203
           +F K +T  Y  TYS LT+     LK   L H  PE+F  N  +    R VV   E   K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277

Query: 204 IRHYKIE 224
           + H K++
Sbjct: 278 LFHVKLQ 284


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 33  NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 203
           +F K +T  Y  TYS LT+     LK   L H  PE+F  N  +    R VV   E   K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277

Query: 204 IRHYKIE 224
           + H K++
Sbjct: 278 LFHVKLQ 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,189
Number of Sequences: 27780
Number of extensions: 260416
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)