Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20l02
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 30 1.5
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 30 1.5
09_06_0286 + 22040904-22040936,22041342-22041680,22041948-220421... 30 2.0
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737... 29 2.6
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 29 4.6
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 28 6.1
12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078 28 8.0
12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754 28 8.0
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 413 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDN 312
VKHSD +P T + ANV SKS I P+ G +N
Sbjct: 657 VKHSDLKPGTVSAANVDSKS--ISAKPSTGSFEN 688
>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/100 (25%), Positives = 42/100 (42%)
Frame = +1
Query: 49 C*NIVFFRKSLVLKHVRYISQFKIQRTDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNEN 228
C + ++ K + L H +++ +K + DC+ P K D L +DK + +N+
Sbjct: 747 CYSHIYSEKLVHLPHCYFVNDYKQKNRDCLDPVCPHKRSDYGL--PEDK--FIFACFNQL 802
Query: 229 AKGEPAILTASAQKYDRESGGKLWKMLKLSPIPKLGESRI 348
K +P I R LW L P GE+R+
Sbjct: 803 YKMDPEIFDTWCNILKRVPNSALW----LLRFPAAGETRV 838
>09_06_0286 +
22040904-22040936,22041342-22041680,22041948-22042190,
22042285-22042434,22043659-22044045
Length = 383
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 6 IHLRLFQYYFSKLKMLEYCFFSQKSSFETC 95
+HLR YF ++ Y +FS S FE C
Sbjct: 217 LHLRNLNVYFDGIRFQSYDYFSLASFFEAC 246
>01_06_1674 +
39072861-39073260,39073288-39073358,39073659-39073716,
39074604-39074659,39075179-39075400
Length = 268
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 82 VLKHVRYISQF-KIQRTDCVPYGTPRKIK 165
V++ R IS F K+QR D P+GT RK+K
Sbjct: 208 VIEATRSISYFAKLQRGDWSPHGTARKLK 236
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 45 KMLEYCFFSQKSSFETCSIYFSI 113
++L YC+ S + +TCS+Y S+
Sbjct: 183 RILNYCYSSLPADLKTCSLYLSV 205
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 254 LQVHKSMIENPVVNFGKC*NYHPSRNWENQEYFS 355
LQVH S + N ++N +C + +P W Y S
Sbjct: 13 LQVHSSPLTNRLINHARCKDQNPYLRWYIWNYES 46
>12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078
Length = 256
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 485 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 342
D T RI LFS + L++ V+H + A N N G++ ++L
Sbjct: 35 DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82
>12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754
Length = 297
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 485 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 342
D T RI LFS + L++ V+H + A N N G++ ++L
Sbjct: 35 DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,836
Number of Sequences: 37544
Number of extensions: 380124
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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