Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20l02
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical...    32   0.34 
Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical
           protein C18E3.1 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 241 VHLWRFHYNKLPRQDLCLYDHKVSDPLF 158
           +HL R    K   QDLC +D K+ +PLF
Sbjct: 63  IHLDRSKMRKAVHQDLCTHDQKILEPLF 90


>Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical
           protein ZK899.8j protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 461 IRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDNFNIFQSLP 288
           +R++SLF   C  T+   HSD       +A +G KS +  +SP+  +   +     LP
Sbjct: 61  VRVSSLFGEYCRYTVNTSHSDSGTSRIASA-LGGKSSS-QESPSLRIKARWQSVHILP 116


>AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical
           protein T05H4.7 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 91  HVRYISQFKIQRTDCVP--YGTPRKIKDPKLCGHK 189
           H  + + +K Q  DC P  YG P    DPKL  H+
Sbjct: 429 HPDWGNMWKSQSCDCAPAPYGGPLPYYDPKLYPHE 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,957
Number of Sequences: 27780
Number of extensions: 371871
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)