Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k23
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 65 4e-11
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 60 1e-09
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 56 3e-08
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 53 2e-07
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 52 3e-07
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 37 0.016
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 35 0.066
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 31 1.1
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 29 3.3
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 29 3.3
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 7.6
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 7.6
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 28 7.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.6
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +2
Query: 437 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHGD---FVTIIDLPEGEHQYKYFVDGEW 604
+PT F W GGK+V+++G+FT W + +PM G F I L G HQYK+ VDGEW
Sbjct: 59 VPTRFVWPYGGKRVYLTGSFTRWTEHLPMSPVEGCPTVFQAICSLSPGIHQYKFCVDGEW 118
Query: 605 RHDPTVKVIDNGMG 646
RHD I G
Sbjct: 119 RHDERQPTITGDYG 132
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +2
Query: 449 FKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEWRHDPTVKV 628
F W GG++ G+FT W+ PM +F + DLP G +QY++ VDG WR D T
Sbjct: 6 FAWPYGGQRASFCGSFTGWRECPMGLVGAEFQVVFDLPPGVYQYRFLVDGVWRCDETKPC 65
Query: 629 IDNGMG 646
+ + G
Sbjct: 66 VRDEYG 71
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 431 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHG-DFVTIIDLPEGEHQYKYFVDGEWR 607
K++PT+ W GGK V+I G++ +WK+ +V G D ++ L G ++Y++ VDGE R
Sbjct: 125 KLIPTLLVWTLGGKNVYIEGSWDNWKSKQLVHKCGKDHCVMLGLASGVYRYRFIVDGERR 184
Query: 608 HDP 616
P
Sbjct: 185 FQP 187
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 431 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHG-DFVTIIDLPEGEHQYKYFVDGEWR 607
K +PT+ W GG +VF+ G++ +W + +++ G D ++ LP G + Y+ VDGE +
Sbjct: 144 KGIPTLISWSQGGNEVFVEGSWDNWTSRRVLEKSGKDHTILLVLPSGVYHYRIIVDGEPK 203
Query: 608 HDPTV-KVIDNG 640
+ P + V D G
Sbjct: 204 YVPELPHVADEG 215
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 431 KVLPTVFKWEGGGKQVFISGTFTDWKTI-PMVKSHGDFVTIIDLPEGEHQYKYFVDGEWR 607
K +P + W GGK V + G++ +WK+ PM KS D ++ LP G ++Y++ VDGE +
Sbjct: 154 KEIPVLIVWTLGGKNVSVEGSWDNWKSRKPMQKSGKDHSLLLILPSGVYRYRFVVDGERK 213
Query: 608 HDPTVKVIDNGMGS 649
P + + MG+
Sbjct: 214 CLPDLPCETDIMGN 227
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 413 KIVDDIKVLPTVFKWEGGGKQVFISGTFTDW---KTIPMVKS--HGDFVTIIDLPEGEHQ 577
K VD +K W G + V I G+F W + + M S F ++L G ++
Sbjct: 373 KDVDSLKHQEISVFWVGIAENVQIMGSFDGWSQGEAMSMEYSGYQARFSATLNLRPGRYE 432
Query: 578 YKYFVDGEWR 607
K+ VDGEWR
Sbjct: 433 IKFLVDGEWR 442
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 449 FKWEGG--GKQVFISGTFT-DWKTIPMVKSHGD--FVTIIDLPEGEHQYKYFVDGEWRHD 613
F W G G+ V + G FT +WK G + I L G++ YK+ G+WRH
Sbjct: 459 FVWNSGREGEDVELVGDFTSNWKDKVKCDHKGGSRYEAEIRLRHGKYYYKFIAGGQWRHS 518
Query: 614 PTV 622
++
Sbjct: 519 TSL 521
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Frame = +2
Query: 383 ERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTIPMVK--SHGDFVTIID 556
E+ L + K + +++ + V W +V ++G+F W + ++ G F +
Sbjct: 371 EKQRRLDEAEKALSELRTVYIV--WSNPASEVLLTGSFDGWTSQRRMERSERGTFSLNLR 428
Query: 557 LPEGEH----------------QYKYFVDGEWRHDPTVKVIDN 637
L G + Q K+ VDG WR+DP ++ N
Sbjct: 429 LYPGRYEALLFSSHLIAPLPILQIKFIVDGVWRNDPLRPLVSN 471
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = +2
Query: 404 DGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIIDLPEGEHQYK 583
DGS IVD + T+F G K ++G + + ++ + G H++
Sbjct: 178 DGSSIVDTNFTVGTIFGVWPGDKLTGVTGGDQVAAAMGIYGPRTTYIIALKDCPGTHEFL 237
Query: 584 YFVDGEWRHDPTVKVIDNG 640
+G+W+H I G
Sbjct: 238 LLDEGKWQHVQDTTTIGEG 256
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 563 EGEHQYKYFVDGEW 604
EG ++YKY VDG+W
Sbjct: 200 EGRYEYKYIVDGKW 213
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 500 DWKTIP--MVK-SHGDFVTIIDLPEGEHQYKYFV 592
+WK P +VK +H DF T + EGEHQ F+
Sbjct: 92 EWKDFPKQIVKLAHSDFRTKKTITEGEHQTHLFL 125
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 170 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 268
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 320 DGAPYYTKAVPESDIEYTEQRERSNTLTDGSKIVD---DIKVL-PTVF----KWEGGGKQ 475
D +PY+T V +++ + + E+SN+ + K V+ +KV PT+F K EG GK
Sbjct: 13 DESPYHTAVVTTNNLVRSIKAEKSNSSSSSGKPVETDIGLKVASPTMFGFNTKIEGTGKN 72
Query: 476 VFI 484
+ +
Sbjct: 73 MAV 75
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = +2
Query: 335 YTKAVPESDIEYTEQRERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTI 514
YTK P I Y ++ L S DDI +L T+ G V TFT +I
Sbjct: 4991 YTKKCPPDIILYVDR------LDSWSNHFDDIPLLKTITTILGTSIWVNTVVTFTHANSI 5044
Query: 515 PMVKSHGDFVT 547
P S+GD +T
Sbjct: 5045 PPDNSNGDPMT 5055
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,406,648
Number of Sequences: 37544
Number of extensions: 337739
Number of successful extensions: 842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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