Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k19
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.4
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 27 3.1
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 27 3.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.2
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 5.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 7.3
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 7.3
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.6
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.6
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 231 IAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACN 362
+ +F F+S F +N+ N+F + P LR S ACN
Sbjct: 20 VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACN 63
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 425 YTIDHSK--CKQYFKISQCEYTLGRYAHIK 508
Y++DH+ CKQY + + Y LGR + K
Sbjct: 642 YSLDHAAQICKQYNYLDELVYILGRMGNNK 671
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -2
Query: 397 PGTILVITISEKLHANSDGLRKGSLSYARKTLTVELFLIT-KASVNSSELKSPNAAIIPS 221
PG ++V++ +++ +S ++KG++ ++ L V+ L T ++ + EL + +
Sbjct: 92 PGDLVVVSYNKEYSTDSFAIQKGTIKPGQRVLIVDDILATGGTALAADELVTRLGGELVG 151
Query: 220 EYFPNELLVISLTKELV 170
F EL + K L+
Sbjct: 152 HLFLLELTFLQGRKRLM 168
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 246 DFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEF 353
DF +L AF++ + FLAY + FL+ F
Sbjct: 1141 DFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLGGF 1176
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 243 GDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACNFSDIV 377
G F+ T V S +V Y ++PF+R NFS IV
Sbjct: 30 GSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIV 74
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 309 FLAYDKEPFLRPSEFACNFSDIVITS 386
FLAYD+ P L E +F D+ S
Sbjct: 338 FLAYDRSPSLTNQEAESSFQDVASIS 363
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 295 ELFLITKASVNSSELKSPNAAIIPSEYFPNELLVIS-LTKELVDKITLNNK 146
E F+ K S + + + +YF ++ L+ S L++ELVDKI L K
Sbjct: 394 EFFVKEKNGSESHDHQGQGDVVWKGKYFLDKELIPSFLSEELVDKIFLIGK 444
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.6
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Frame = -2
Query: 325 LSYARKTLTVELFLITKASVNSSELKSPNAAIIPSEYFPNELLVIS--------LTKELV 170
LS KTL L L N + K + + P+E+ ++ LT
Sbjct: 451 LSEDSKTLVRNLVLALSLCHNVTPSKGHDGVVSYQAASPDEVAIVKWTSTLGLVLTNRTR 510
Query: 169 DKITLNNKIKIVYTIF 122
D ITLNN + + IF
Sbjct: 511 DAITLNNNVYKILNIF 526
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 210 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACNFSD 371
G S+ + A F +++ D +NS +++V +E +L P + AC +S+
Sbjct: 135 GLQSKNVQACIKHFVCNDMEDE---RNSVSIDVSQRALREVYLMPFQLACKYSN 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,027
Number of Sequences: 5004
Number of extensions: 57016
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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