Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k19
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827...    31   1.1  
04_04_1576 - 34551095-34552645                                         29   4.3  

>08_02_0619 -
           19382172-19382366,19382453-19382545,19382621-19382702,
           19382793-19382903,19383323-19383681,19384330-19384533,
           19384582-19384756,19384885-19385474,19385555-19385800
          Length = 684

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = +3

Query: 210 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACNFSDIVITSI 389
           G + +G  A F  F+  +L   F   +   +N+  A+  E ++   +F    +D  +  +
Sbjct: 489 GAFKDGPNANFA-FSFKDL-HVFFKMDKMDINLVAAWYLEHYI---QFLVYPTDQTVVVL 543

Query: 390 VPGDYDGDAYMDILLTTQNVNNTSKFH 470
            P DYD DAYM+ L      ++  K H
Sbjct: 544 DPADYDKDAYMEFLCLLNLAHDRYKKH 570


>04_04_1576 - 34551095-34552645
          Length = 516

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 342 PSEFACNFSDIVITSIVPGDYDGDAYMDILLTTQNVNNTSKFHNVSILWGGMPTLNCSDA 521
           P+E     SD+++  I P +Y   A  +      N+N   K H   I  GG   +  ++A
Sbjct: 326 PAESLRVVSDMILDGIRPNNYTIVAAANACANLANLNQGRKIHGYVIKLGGDSNVGVNNA 385

Query: 522 L 524
           L
Sbjct: 386 L 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,536
Number of Sequences: 37544
Number of extensions: 295070
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)