Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k16
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    24   2.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   4.0  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    23   4.0  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   5.3  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    22   9.3  

>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 112 ECTRTFLET*NHYFILNLI 168
           EC+R F+++ N  F+L LI
Sbjct: 789 ECSRAFVDSANQKFLLRLI 807


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 103 ANLSKWYSGLSLL*RVDSFSH 41
           +++  WY G SLL  +DS +H
Sbjct: 440 SSVCPWYQGPSLLEYLDSMTH 460


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 136 FQEMFLYILTLANLSKWYSGLSLL*RVDSFSHWNFPAKDSDICP 5
           F   ++YIL  AN S   +   +  R+D    WN  +  +++CP
Sbjct: 67  FWNKWIYILC-ANTSSNITATRIF-RLDDDQPWNLESLVAEVCP 108


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 118 TRTFLET*NHYFILNLIFCNLRPK 189
           T +FLET   Y I  LI C   PK
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPK 228


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 190 FSDGDYKILNLI*NNDFKFQEMFLYILT 107
           FSD DY+ L+L   +++   ++F Y LT
Sbjct: 74  FSDFDYQSLSLALYHEYIEYDLFNYGLT 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,253
Number of Sequences: 5004
Number of extensions: 12588
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)