Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k16
         (190 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0400 + 3169597-3170504,3170510-3171269                           27   2.8  
08_02_0900 + 22405948-22406397                                         26   4.9  
02_05_1004 + 33444248-33444847                                         25   6.4  
02_03_0222 - 16565885-16566244,16568069-16568227                       25   6.4  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    25   8.5  
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975...    25   8.5  

>12_01_0400 + 3169597-3170504,3170510-3171269
          Length = 555

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 39  QWEKLSTRQRRERPLYHL 92
           QW  L  R+RR  PL+HL
Sbjct: 298 QWSSLIPRRRRPPPLFHL 315


>08_02_0900 + 22405948-22406397
          Length = 149

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 106 LANLSKWYSGLSLL*RVDSFSHW 38
           LA +++W  GL+ +  V +F HW
Sbjct: 96  LATVARWLVGLAKVATVGTFQHW 118


>02_05_1004 + 33444248-33444847
          Length = 199

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 124 FLYILTLANLSKWYSGLSLL*RVDSFSHW 38
           FLY   L  L++W   L+   R++S++ W
Sbjct: 63  FLYYHNLVRLARWELPLAWSPRLESYARW 91


>02_03_0222 - 16565885-16566244,16568069-16568227
          Length = 172

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 31  GNSNGRNYLHVKEERDRCT 87
           GNSNG N+L   EE D  T
Sbjct: 145 GNSNGTNHLTSNEEHDNNT 163


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 40  WNFPAKDSDICP 5
           WN+P+ D D CP
Sbjct: 914 WNYPSNDPDQCP 925


>09_02_0478 -
           9749306-9749382,9749543-9749659,9749711-9750398,
           9750521-9751161,9751336-9751462
          Length = 549

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 34  NSNGRNYLHVKEERDRCTI 90
           ++ GR +LHV  E+ RC +
Sbjct: 164 DAKGRTFLHVAVEKKRCNV 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,039
Number of Sequences: 37544
Number of extensions: 67319
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)