Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k16
(190 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1 prot... 28 0.80
X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein. 28 0.80
AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical... 28 0.80
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 26 3.2
Y14066-1|CAA74394.1| 497|Caenorhabditis elegans catalase 2 prot... 25 5.6
AL034488-11|CAD31698.1| 512|Caenorhabditis elegans Hypothetical... 25 5.6
AL034488-5|CAA22458.2| 497|Caenorhabditis elegans Hypothetical ... 25 5.6
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 25 7.5
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 25 7.5
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 25 7.5
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 25 7.5
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 25 7.5
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 25 7.5
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 25 7.5
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 25 7.5
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 25 7.5
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 25 7.5
AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm rece... 25 7.5
>Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1
protein.
Length = 497
Score = 28.3 bits (60), Expect = 0.80
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I DF +MF+ ++T KW
Sbjct: 252 SDPDYSIRDLFNAIEKGDFPVWKMFIQVMTFEQAEKW 288
>X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein.
Length = 500
Score = 28.3 bits (60), Expect = 0.80
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I DF +MF+ ++T KW
Sbjct: 252 SDPDYSIRDLFNAIEKGDFPVWKMFIQVMTFEQAEKW 288
>AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical
protein Y54G11A.5 protein.
Length = 500
Score = 28.3 bits (60), Expect = 0.80
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I DF +MF+ ++T KW
Sbjct: 252 SDPDYSIRDLFNAIEKGDFPVWKMFIQVMTFEQAEKW 288
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 118 YILTLANLSKWYSGLSLL 65
Y+L LANL W GLSL+
Sbjct: 11 YLLFLANLVLWVGGLSLI 28
>Y14066-1|CAA74394.1| 497|Caenorhabditis elegans catalase 2
protein.
Length = 497
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I + +F +MF+ ++T KW
Sbjct: 252 SDPDYAIRDLFNAIESRNFPEWKMFIQVMTFEQAEKW 288
>AL034488-11|CAD31698.1| 512|Caenorhabditis elegans Hypothetical
protein Y54G11A.13 protein.
Length = 512
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I + +F +MF+ ++T KW
Sbjct: 267 SDPDYAIRDLFNAIESRNFPEWKMFIQVMTFEQAEKW 303
>AL034488-5|CAA22458.2| 497|Caenorhabditis elegans Hypothetical
protein Y54G11A.6 protein.
Length = 497
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 187 SDGDYKI---LNLI*NNDFKFQEMFLYILTLANLSKW 86
SD DY I N I + +F +MF+ ++T KW
Sbjct: 252 SDPDYAIRDLFNAIESRNFPEWKMFIQVMTFEQAEKW 288
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 67 EERDRCTI*INSPTSECTRTFLE 135
E +CT+ +P C RT+LE
Sbjct: 1027 EHDQKCTVGSRTPVGFCVRTYLE 1049
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1446 RLFLHGIVTSKYFDLAIAAVIGIN 1469
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1431 RLFLHGIVTSKYFDLAIAAVIGIN 1454
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1479 RLFLHGIVTSKYFDLAIAAVIGIN 1502
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1438 RLFLHGIVTSKYFDLAIAAVIGIN 1461
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1438 RLFLHGIVTSKYFDLAIAAVIGIN 1461
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1446 RLFLHGIVTSKYFDLAIAAVIGIN 1469
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1479 RLFLHGIVTSKYFDLAIAAVIGIN 1502
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1431 RLFLHGIVTSKYFDLAIAAVIGIN 1454
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 102 RIYLNGTAVSLFFDV*IVSPIGIS 31
R++L+G S +FD+ I + IGI+
Sbjct: 1431 RLFLHGIVTSKYFDLAIAAVIGIN 1454
>AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm
receptor protein 79 protein.
Length = 358
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 175 YKILNLI*NNDFKFQEMFLYILTLAN 98
+ +NLI N +F E L+ILT+AN
Sbjct: 60 FPAVNLITNMNFYTHEATLFILTVAN 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,200,901
Number of Sequences: 27780
Number of extensions: 66807
Number of successful extensions: 163
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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