Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k15
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 228 5e-61
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 129 3e-31
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 61 2e-10
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 53 3e-08
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 40 2e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 29 0.60
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.4
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 2.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 5.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.6
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 25 7.4
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 7.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.4
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 25 9.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 9.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.7
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 228 bits (558), Expect = 5e-61
Identities = 105/188 (55%), Positives = 148/188 (78%), Gaps = 1/188 (0%)
Frame = +3
Query: 102 SSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEE-GMLTPLLQTSECTFAYIK 278
+SAI++L++KGKV+ISR+YR D+ + V++KF+PL E EEE G TP L + YI
Sbjct: 2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIH 61
Query: 279 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 458
N++Y+++ +K N++ + VFL K+ +V +YFKEL+EESIRDNFV++YELLDE++DFG
Sbjct: 62 HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFG 121
Query: 459 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLL 638
+PQTT++KILQEYITQ + ++ P+A+TNA+SWRSEGI YRKNEVFLDVIESVNL+
Sbjct: 122 FPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
Query: 639 ANSNGNVL 662
A ++G V+
Sbjct: 182 AAADGTVI 189
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 129 bits (312), Expect = 3e-31
Identities = 65/199 (32%), Positives = 110/199 (55%), Gaps = 13/199 (6%)
Frame = +3
Query: 105 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 284
S ++I ++KG LI + +R D+ V + F ++ + P++ T+ Y K
Sbjct: 3 SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTD--YRHPIVSIGSSTYIYTKHE 60
Query: 285 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 464
+LY+V+ TK N N+ +V FL +++ +T YF +L E +++DN I+ELLDE+ID+G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 465 QTTDSKILQEYIT-------------QEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEV 605
QTT+ L ++ + H ++ + +V WR GIKYRKN +
Sbjct: 121 QTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSI 180
Query: 606 FLDVIESVNLLANSNGNVL 662
++D++E +NLL +S GNVL
Sbjct: 181 YIDIVERMNLLISSTGNVL 199
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 60.9 bits (141), Expect = 2e-10
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +3
Query: 108 AIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSE--CTFAYIKT 281
AIY++D G +L+ RG ++ L + P + ++ F ++
Sbjct: 6 AIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEE 65
Query: 282 NNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGY 461
+ + TT + + + +IV+V+ +F + N VI +LL E+ID+GY
Sbjct: 66 DVRLCIPTTCDTEPL-YIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124
Query: 462 PQTTDSKILQEYITQEGHKLE------MQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 623
+ LQ+ + + +Q P + V WR+ KY NE F+ V+E
Sbjct: 125 ATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLE 184
Query: 624 SVNLLANSNGNV 659
V+ + NG +
Sbjct: 185 RVSAVYQPNGKL 196
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +3
Query: 108 AIYILDVKGKVLISRNYRGDVDLGV---IDKFMPLLMEKEEEGMLTPLLQTSECTFAYIK 278
A+ I++ GK +ISR +R + V + F L+ EK + +++ F Y
Sbjct: 5 AVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQN----TTVESDNVRFVYQP 60
Query: 279 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 458
+ LYIV T +NI L+ + +V+T LEE I + I+ DE G
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 459 YPQTTDSKILQEYITQEGHKLEMQ 530
Y ++ Y+ E H+ ++Q
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQ 144
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 40.3 bits (90), Expect = 2e-04
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -2
Query: 397 SSSNSLKYSVITSTILYKNTNTSAILAFFFVVDTMYKLLVLI*ANVHSLVCNKGVNIPSS 218
S S ++ T TI T+TS+I+ + V+T+Y+ + + + S++ N I S
Sbjct: 336 SLSTEVEVEYFTKTI----TDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGS 391
Query: 217 SFSIS-KGMNLSITPRSTSPR*FLEMRTLPLTSSMYIAEEDMVKQFLKLYFRLILHFTIV 41
SF K +N + P TS + TLP +S M V + F +I FT
Sbjct: 392 SFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSS 451
Query: 40 Y 38
Y
Sbjct: 452 Y 452
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.1 bits (62), Expect = 0.60
Identities = 20/99 (20%), Positives = 39/99 (39%)
Frame = +3
Query: 204 LMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK 383
L+ + + L+ Y + LY N + ++ VE++ +F
Sbjct: 38 LISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFG 97
Query: 384 ELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYI 500
+ E + NF + +LDE+I G ++ K + E I
Sbjct: 98 NVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERI 136
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 603 LHSFYILCLRTSTTQHW*LPWVFWAAFQVYD 511
+H FY L +T Q W P++FW +D
Sbjct: 423 IHIFYFLFFHVATIQQW--PFLFWLPSTKFD 451
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 237 PLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIV 359
P+L TS F I+ +Y+ +A FVFLYK++
Sbjct: 342 PILFTSVYHFTIIENGLVYLGILVGALITLACYFVFLYKVM 382
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 400 LSSSNSLKYSVITSTILYKNTNT-SAILAFFFVVDTMYKLLVL 275
++ SN Y +I + KNT +A+++FF + T YK L L
Sbjct: 794 INFSNCFTYWIINCILEKKNTKARTAVISFF--IQTAYKCLSL 834
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 393 EESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 524
E SI VV ELL+ L ++ DS + Y+T G L+
Sbjct: 66 ETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTLIGEFLQ 109
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 408 DNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQ 530
DN + +++ L E+ G + S L+ Y+ +G +E+Q
Sbjct: 59 DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQ 99
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 238 GVNIPSSSFSISKGMNLSITPRSTSPR*FLEM 143
G I S+ FS+ + + L+ RS SPR FLE+
Sbjct: 119 GGKITSAFFSLLQSVLLNHGQRSISPRNFLEI 150
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 383 FEVLSHNFNNFVQEYKHKCNISIF 312
FE L+ NF+NFV+ +++ N+ F
Sbjct: 4269 FEKLTFNFSNFVKYRQYQINLKDF 4292
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 531 PKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLAN 644
PK+ NA +W EGI++ K +F +I + L +
Sbjct: 94 PKLDFVYLNAGAWDLEGIQWLK-AIFSTLINPIQALTH 130
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 219 EEGMLTPLLQTS----ECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKE 386
E LT LL+ S E T ++ ++ +N+ L +I+E + E +
Sbjct: 471 ERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS 530
Query: 387 LEEESIRDN 413
LEEESI+++
Sbjct: 531 LEEESIKES 539
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 57 KINLKYSLRNCFTMSSSAIYILDVKGKVLISRNYRGDV 170
++ L+ ++++C TM +Y L+V+ + + + GDV
Sbjct: 86 QMELETAVKSCMTMEQLELYSLNVRLEEITQKLRTGDV 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,285
Number of Sequences: 5004
Number of extensions: 59467
Number of successful extensions: 181
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -