Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k12
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    31   0.24 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.9  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   6.9  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.9  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.1  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 500 EINCY--NEPKAKI-VLLLNLKSPEDAVPFYKLPMKTLLHIYXVTMNDVEN 643
           + N Y  N  K+ I V + ++KSPE A+    +P+  LLH    T + VEN
Sbjct: 676 QTNAYIENNKKSSIKVAVFDVKSPEKAIATVSVPLPELLHEGYDTFHFVEN 726


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   FLFVYFDYVINVL*NYSVIIYCIIKF 81
           F F+Y D+  N+  NY   IY + +F
Sbjct: 837 FTFIYSDFTSNITNNYRPRIYYLAQF 862


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 728 ILLVNFSHKPVGEHLIEMPNNKA 660
           + L N  ++ +G+++I  PNNKA
Sbjct: 121 LYLANLKNQNIGDNVIPYPNNKA 143


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 596 SLVACRMAQHPLEISSLIVKLFLLLVHCSNLSHLLYSILEFVQ 468
           S +AC +++  ++   +  KLF  L+H SNL   +  ++   Q
Sbjct: 178 SKLACIISKPAVKTPEIYSKLFHYLLHSSNLKAFINPLIPLTQ 220


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 535 YFCFWFIVAIYLIFCIRF*SLYRYINLVIDNFVFAHIIEI*PQNIPKTIIRMR---PYEK 365
           +FCF+F  +++  F   F SL  + N         H+++I  Q    +++      P + 
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSL--HFNFFFRLCRHKHLLDIPDQTTLSSLLHRHTRLPRDV 164

Query: 364 RRNH 353
           RR H
Sbjct: 165 RRKH 168


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 679 RCQIIKPVFTETIFNIIHSDLVYVKQ 602
           + ++IKP+   T+   +H D +YV+Q
Sbjct: 28  KAKVIKPI-PATVLKYLHEDSIYVEQ 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,183
Number of Sequences: 5004
Number of extensions: 54280
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)