Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k12
         (773 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF223391-2|AAF37688.1| 2162|Homo sapiens calcium channel alpha1E...    31   4.6  

>AF223391-2|AAF37688.1| 2162|Homo sapiens calcium channel alpha1E
            subunit, delta19 delta40 delta46 splice variant protein.
          Length = 2162

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
 Frame = +2

Query: 305  FC-YLCLNI*IKMI----GRLMISSFLVRPHSYNSFWNVLWLNFNNVCKNKIIYNQIYVP 469
            FC +L LN+ + +I      L   S ++ PH  + F  V W  ++     +I Y  +Y  
Sbjct: 1601 FCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRV-WAEYDRAACGRIPYKDMYKL 1659

Query: 470  VQTLKSNTKDEINCYNEPKAKIVLLLNLKSPEDAVPFYKLPMKTLL 607
            V+ +        NC      K ++L+N+   ED    +   +  L+
Sbjct: 1660 VRVISPPLGLGENCPYRVACKRLVLMNMPVAEDMTVHFTSTLMALI 1705


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,606,432
Number of Sequences: 237096
Number of extensions: 1605231
Number of successful extensions: 2583
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2583
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)