Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k09
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   244   1e-65
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   129   3e-31
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   126   3e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   126   4e-30
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        29   0.83 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.4  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   4.4  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   7.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  244 bits (596), Expect = 1e-65
 Identities = 114/191 (59%), Positives = 134/191 (70%)
 Frame = +1

Query: 109 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 288
           MREIVH+QAGQCGNQ+GA FW  I++EHG+D  G+Y GTS+ Q ER++VY+NEA+     
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55

Query: 289 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 468
            GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56  -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114

Query: 469 AVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYXXXXXXX 648
           AVLDVVR+E E CD LQGFQ                   KIREEYPDR+M T+       
Sbjct: 115 AVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174

Query: 649 XXXXXXXXYNA 681
                   YNA
Sbjct: 175 SSDTVVEPYNA 185


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  129 bits (312), Expect = 3e-31
 Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
 Frame = +1

Query: 109 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 285
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+      +
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58

Query: 286 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 462
           E+G GK+VPR+I +DLEP  +D VR+G Y  LF P+  V G+  A NN+A+GHYT G E+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118

Query: 463 VDAVLDVVRKECENCDCLQGF 525
           +D+VL+ +R+  +NC  LQGF
Sbjct: 119 IDSVLERIRRMADNCSGLQGF 139


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  126 bits (304), Expect = 3e-30
 Identities = 63/141 (44%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
 Frame = +1

Query: 109 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 282
           MREI+ +  GQ G QIG   WE+   EHGI P G     +  Q      S +++E     
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58

Query: 283 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 462
               GKYVPR+I +DLEP  +D VR+G Y  LF P+  + G+  A NN+A+GHYT G EL
Sbjct: 59  ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114

Query: 463 VDAVLDVVRKECENCDCLQGF 525
           VD V D +R+  +NC  LQGF
Sbjct: 115 VDEVTDKIRRIADNCSGLQGF 135


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  126 bits (303), Expect = 4e-30
 Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
 Frame = +1

Query: 112 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 291
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++       
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56

Query: 292 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELV 465
             +Y+PRAIL+DLEP  ++ + S  YG L+ P+N +  ++  GAGNNWA G Y+    + 
Sbjct: 57  DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115

Query: 466 DAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTY 627
           + ++D++ +E +  D L+GF                    ++ + YP +I+ TY
Sbjct: 116 EDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTY 169


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 430 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 519
           A+GH   G ELV A  D +RK+ EN   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 148 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 249
           N++G    E+++E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 220 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 333
           G+SD+ +  +S +  EAS  +  S    VP+ +L D +
Sbjct: 49  GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 361 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 462
           G YG +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,988
Number of Sequences: 5004
Number of extensions: 34530
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)