Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k05
(282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical pr... 48 1e-06
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 2.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 2.7
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 3.6
U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeo... 25 6.3
U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 25 6.3
Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical pr... 25 8.4
U55373-6|AAC25889.1| 250|Caenorhabditis elegans Hypothetical pr... 25 8.4
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 8.4
AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical ... 25 8.4
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 25 8.4
>Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical
protein T07A5.5 protein.
Length = 35
Score = 47.6 bits (108), Expect = 1e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Frame = +1
Query: 79 MITDIQLAVFSNILGVSIFLLVILYHYINAN 171
MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1 MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 28 LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 126
+I + N+ I S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 28 LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 126
+I + N+ I S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 13 NLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 120
N+NT + N I F + L ++ L FSN++
Sbjct: 241 NMNTSMAVTLANFIPFISDGLSLVQPWLLVTFSNVM 276
>U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform a protein.
Length = 632
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 163 LCSDTG*LIRIWRLPKCWRKLRAG 92
LC G L + R PK W KL++G
Sbjct: 336 LCRSQGTLSDLLRNPKPWNKLKSG 359
>U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform b protein.
Length = 641
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 163 LCSDTG*LIRIWRLPKCWRKLRAG 92
LC G L + R PK W KL++G
Sbjct: 345 LCRSQGTLSDLLRNPKPWNKLKSG 368
>Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical
protein T07D10.1 protein.
Length = 281
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 79 MITDIQLAVFSNILGVSIFLLVILYHYI 162
++ +++ F ILG +FLL +L H I
Sbjct: 2 IVASVEVTCFHVILGFLMFLLYLLLHQI 29
>U55373-6|AAC25889.1| 250|Caenorhabditis elegans Hypothetical
protein F26F12.2 protein.
Length = 250
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 16 LNTKLIHNFNNLIQFKTSNL 75
L KLI N+NNL + K +NL
Sbjct: 87 LEEKLIQNYNNLARPKLNNL 106
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 262 FYLHLNIKHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG*LI 137
F L +KH ++ +P+L + +IWN + + S TG +I
Sbjct: 152 FLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVI 193
>AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical
protein Y105C5B.8 protein.
Length = 447
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 105 FLQHFGSLHILISYPVSLHKCE*FQ 179
FL+ FG L + S P++ + CE F+
Sbjct: 25 FLEIFGVLMCVFSVPLTYYSCECFE 49
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 163 LCSDTG*LIRIWRLPKCWRKLRAG 92
LC G L + R PK W KL++G
Sbjct: 254 LCRSQGTLSDLLRNPKPWSKLKSG 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,547
Number of Sequences: 27780
Number of extensions: 109845
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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