Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20k02
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   4.0  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   7.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   9.3  

>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 120 FKLSSRTLICYGMYCNTRQIRGMLLLTDKKDAFLTIKTYVTVRNTTLFLHH 272
           + +  + L+  GM C  R  + ++ +TD +D F++  +   V  +  FL H
Sbjct: 338 YVIGDKKLLTLGMLC--RCTKRIIAITDAEDKFISQSSAQQVSGSLPFLEH 386


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 144 ICYGMYCNTRQIRGMLLL 197
           +CY  YCN R I+G + L
Sbjct: 149 LCYRAYCNFRAIQGSIQL 166


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 545 GTV*VHLRKTYILQIFSKNILTKIKKIKQIC 637
           G   VH  + YI  + S+N ++ + ++ ++C
Sbjct: 453 GMTLVHASRQYICLVLSRNAVSPVPQVFEVC 483


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 233 LCYST*HDAISSSLIIEQKFLLKAFALNTQALQNQLETLK 352
           LC+S     +  S++     LL   A  TQ L+N +E  K
Sbjct: 443 LCFSQIDSYVRFSILCSLLALLHQIATRTQELENGMENTK 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,527
Number of Sequences: 5004
Number of extensions: 47368
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)