Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20k01
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 29 0.45
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.78
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.4
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 2.4
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 3.2
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 3.2
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 3.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 4.2
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.5
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 5.5
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 5.5
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 7.3
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.3
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 9.7
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 286 DGMQTINGRKICWNHR-KGRCRFGHNCKYAH-DTDIQKTPEELEAEKQQYKSVIFEG 450
+G + + + C N + G CR+G C++AH + ++++ P + + ++ +S + G
Sbjct: 321 NGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYG 377
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 0.78
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 472 PPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIP--NKKVIKMYKEQKARDGKK 639
PPP +P S G V K+K K P S NL N++ K QK++ G K
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSKFGVK 69
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 319 CWNHRKGRCRFGHNCKYAHDTDI 387
C R+G C G NC ++HD ++
Sbjct: 41 CKFFRQGTCTSGKNCIFSHDLEL 63
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 310 RKICWNHRKGRCRFGHNCKYAHDTDIQKTPEELEAEKQQY-KSVIFEGAGTMTAAPPPEA 486
+ IC +KG C+FG C H P+ + + + + S G+ + + P A
Sbjct: 67 KTICKYFQKGNCKFGSKCALEH-----VLPDGRKVKTRAFAPSTTAMGSSSQNISAAPMA 121
Query: 487 TLDPVSNTDDVI 522
+ +SN D ++
Sbjct: 122 NI--ISNNDKIL 131
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 364 KYAHDTDIQKTPEELEAEKQQYKSVIFEGAGTMTAAPPPEATLDP 498
K + + K + EAEKQ+ EG G PPP + P
Sbjct: 661 KVQAEREAAKAATKSEAEKQKPSGKFEEGTGGRAPPPPPAEEVAP 705
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 310 RKICWNHRKGRCRFGHNCKYAH 375
R IC KG C+FG C +H
Sbjct: 71 RPICKYFLKGNCKFGPKCALSH 92
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 319 CWNHRKGRCRFGHNCKYAHDTDIQK 393
C R G C G NC ++H + ++
Sbjct: 47 CKFFRNGTCTAGENCPFSHSLETER 71
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 376 DTDIQKTPEELEAEKQQYKSVIFEGAGTMTAAPPPEATLDPVSNTDDVIWE 528
D +K EE++A + + A PPPE+T++ VSN + E
Sbjct: 431 DKKKEKEHEEIKALFSEVSRTLDSLASWHYVPPPPESTVEIVSNAPTLAME 481
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 421 VSQPLILLVSSVYQCHVHIYSYVQTDIFLFCDSNISSFH 305
V P + LVS V H+ SY + IFL C ++ FH
Sbjct: 391 VVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSV-DFH 428
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 ICWNHRKGRCRFGHNCKYAH 375
+C + RCR+G NCK H
Sbjct: 3 VCKYFLQNRCRYGTNCKNQH 22
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 310 RKICWNHRKGRCRFGHNCKYAHDTDIQKTP 399
+ IC GRC +C +H+ D ++ P
Sbjct: 233 KTICPKFLNGRCNKAEDCNLSHELDPRRIP 262
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 418 KQQYKSVIFEGAGTMTAAPPPEATLDP 498
++QY + +FE T+ A+P P + +P
Sbjct: 91 RRQYPAEVFELTNTLAASPAPPSLSEP 117
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 376 DTDIQKTPEELEAEKQQ-YKSVIFEGAGTMTAAPPPE 483
D + + E+ A++ Q YK I EG PPPE
Sbjct: 49 DDQMNSSSEDYPAQRLQLYKKTISEGDYNFDNVPPPE 85
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/77 (23%), Positives = 31/77 (40%)
Frame = +1
Query: 277 PGKDGMQTINGRKICWNHRKGRCRFGHNCKYAHDTDIQKTPEELEAEKQQYKSVIFEGAG 456
PGK+ T WN G+ F + ++Q T +E A + V F G
Sbjct: 94 PGKEADGTPKQNMKVWNTETGQLVFSFVQRNQTGWNLQYTCDESLAARLVTNEVHFYETG 153
Query: 457 TMTAAPPPEATLDPVSN 507
M+ P + ++ +S+
Sbjct: 154 NMSKGPIAKLRVEGISD 170
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 394 TPEELEAEKQQYKSVIFEGAGTMTAAPPPEATLDP 498
TPE + + Q K +I +MTA P P L P
Sbjct: 68 TPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRP 102
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 463 TAAPPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKN 576
T P PE T+ ++DD ++ G+ K K K+ S N
Sbjct: 327 TVDPIPEGTIIKKESSDDAMF-SGLKKSKPKKSNKSNN 363
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 ICWNHR-KGRCRFGHNCKYAHDTDIQKTPEELEAEKQQYKSVIFEGA 453
+C +++ G C +G CK+ H + K +L+ E + +GA
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQEKYKKGA 235
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 659 IKLINYIFFPSLAFCSLYILITFLLGIKFLLNPGRLSFFLLTP 531
+ L+ YI S+ F + Y + FLLG+KF + F L P
Sbjct: 972 LTLMMYIL--SVPFLTNYFELKFLLGLKFYWVSALILFISLLP 1012
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 410 SNSSGVFCISVSCAYLQLCPNRHLPFL*FQHIFLPFIVCIPSLPGTIFT 264
S SS V + S Y+++ + P + LPF+ C S TI T
Sbjct: 525 SLSSSVVLVCTSAGYVRVFSRQGFPISIHRSKHLPFVAC-SSFQDTIIT 572
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,493
Number of Sequences: 5004
Number of extensions: 54094
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -