Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j24
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    25   3.7  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    24   8.5  

>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 51  FLHNARCNNVRKKKKK 4
           FLH  + NN++KK KK
Sbjct: 189 FLHKTKKNNLKKKNKK 204


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 238 ATAGSISAATKSASLKRLSATDSLA*YMISSHK 336
           AT+GS ++AT SA+    S+  S +    SSH+
Sbjct: 364 ATSGSATSATGSATTTSYSSDSSASSSSSSSHE 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,650
Number of Sequences: 5004
Number of extensions: 22072
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)