Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j24
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           28   2.6  
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159...    27   4.5  
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213...    26   7.9  

>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +3

Query: 93  LVISQTKTMTSIL*RSPYSLRKGTIRASHGCCQTLELISPRQYQAARQGDSRQY*CSNEK 272
           L I  TKT + +  +  Y+L  G++    G     + I P     A +  S +   S  K
Sbjct: 301 LAIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVK 360

Query: 273 CVA*TPVRY 299
            VA  PV Y
Sbjct: 361 AVANDPVAY 369


>09_04_0703 -
           19614057-19614264,19615305-19615407,19615880-19615973,
           19616216-19616229,19616384-19616595,19617653-19617940,
           19618275-19618362,19618444-19618515,19618597-19618672,
           19618755-19618813,19618953-19619016,19619253-19619402
          Length = 475

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 FCKDHLTVFEKVRFAHLTGVVKHWSSFRRASIKQQGKATAG 249
           F +D+ + + +V F +    VKHW++F + +I+  G   AG
Sbjct: 169 FIEDY-SAYAEVCFKNFGDRVKHWATFNQPNIEPIGGFDAG 208


>05_07_0076 -
           27520152-27520379,27520785-27521096,27521194-27521333,
           27521893-27521956,27522071-27522277,27522350-27522493,
           27522578-27522709,27522880-27524294,27524647-27524920,
           27526096-27526129,27527028-27527059
          Length = 993

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 256 SAATKSASLKRLSATDSLA*YMISSHKYIKHCESKK 363
           SAA  S  L R+   D L     SS   IKH  SKK
Sbjct: 183 SAADPSGQLGRVVGVDMLVDLETSSGDIIKHVNSKK 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,047,494
Number of Sequences: 37544
Number of extensions: 131428
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)