Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j23
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   3.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.9  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.8  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   7.8  

>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 587 ANDSSQQLANVAQMVEKVETKM 652
           A D   ++ANV ++VE++ET+M
Sbjct: 203 AADDDTEIANVGKLVEEMETRM 224


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 215 VTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVEN 343
           +++N +S A     +T G+ +  +    +SE+  +SD NF+ N
Sbjct: 48  LSSNAVSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSN 90


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = +2

Query: 233 SAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQE 373
           S +Q +++    HE++HE+  + +E+   S     E+ +++ L+ +E
Sbjct: 143 SQSQNVDSGKTNHEEIHESRHLQTEIEEPS--GLEESSEESVLYSEE 187


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 425 CKQATPVLESE 457
           CKQATPVLE E
Sbjct: 406 CKQATPVLEEE 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,791
Number of Sequences: 5004
Number of extensions: 45560
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)