Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20j18
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.4
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 26 4.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.2
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 26 5.6
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 26 5.6
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 25 7.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.4
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 25 7.4
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 456 AVSCVS-IKAPIQ-CPPHCPLCALGLLQPVTPVVGLKRSY 569
A+S V+ I+ IQ CPP+C L AL LL ++ +G +Y
Sbjct: 37 AISIVNAIEKHIQKCPPNCKLPALYLLDSISKNLGAPYTY 76
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 551 NHRCNGLQQTQST*RAVRGALNRSFDGNARNSSS 450
+ R + Q ++T R+++ ALN SFDGN ++
Sbjct: 452 SERMSRNQFVENTYRSIKQALNDSFDGNEEKKNA 485
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +2
Query: 287 LRQKREDCTNEGTGDSVRRTSD*-----TNWSPLQRVVSQPCYRAQEELP 421
L K D T GTG V D T ++ RVVS PC+ E+ P
Sbjct: 553 LENKEADITLVGTGSEVSLCIDTVKTLETEYNLKARVVSLPCWEVFEQQP 602
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 333 PCGGRATRRTGRHYSVSCPSLVTELKKSCRPSDHMGPFGTRAVSCVSIKAPIQ 491
P + +G H+S S + + L ++ PS + PF AV + A Q
Sbjct: 179 PLSSNSLSSSGMHFSASKQAFNSPLLQTFSPSPSVSPFSNPAVEKLKTSASKQ 231
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 415 VADQAITWAPLELELFLAFPSKLLFNAPLTARYVLW 522
+A + I W+ L+L ++ K + N LT + W
Sbjct: 354 IAPEDIVWSNLDLSMYTRRGKKTISNTILTLMIIFW 389
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 439 APLELELFLAFPSKLLFNAP 498
+PL ++L ++F S +LFNAP
Sbjct: 71 SPLLIKLLISFTSIILFNAP 90
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 439 APLELELFLAFPSKLLFNAP 498
+PL ++L ++F S +LFNAP
Sbjct: 71 SPLLIKLLISFTSIILFNAP 90
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 405 LKKSCRPSDHMGPFGTRAVSCVSIKAPIQCPPHCPLCALGLLQPVTPVVGLKRSYSK 575
L+K+CR + G F RA S + KA PH L+ + V G+ + K
Sbjct: 59 LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDK 115
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 79 NTKFSSNKPASKQNQRKQ 132
N KFSSN P KQ ++KQ
Sbjct: 275 NCKFSSNGPKIKQAKKKQ 292
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 405 LKKSCRPSDHMGPFGTRAVSCVSIKAPIQCPPHCPLCALGLLQPVTPVVGLKRSYSK 575
L+K+CR + G F RA S + KA PH L+ + V G+ + K
Sbjct: 59 LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDK 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,619
Number of Sequences: 5004
Number of extensions: 43863
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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