Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j18
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0203 + 1459600-1460010                                           30   1.4  
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856...    28   5.8  
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128...    28   5.8  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    28   7.6  

>05_01_0203 + 1459600-1460010
          Length = 136

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 348 ATRRTGRHYSVSCPSLVTELKKSCRPSDHMGPFGTRAVSCVSIKAP 485
           A RRT + +S+S      + K  CRP    G    R V+C  IK P
Sbjct: 4   AWRRTSK-FSISQRDFARKRKYLCRPMPPYGTLEYRTVTCSMIKVP 48


>03_03_0117 -
           14583102-14583186,14585202-14585336,14585440-14585604,
           14586168-14586245,14586796-14586941
          Length = 202

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 354 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 449
           R  GR   +    LV  L++ CRP D   PFG
Sbjct: 27  RYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFG 58


>02_04_0587 +
           24110333-24110584,24111193-24111261,24112347-24112850,
           24113094-24113336
          Length = 355

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 651 SHSPMDSRTGRTGTDTAHSSGAYQPA*STTSL 556
           SHS  DS TG TG D A ++    P+   T+L
Sbjct: 104 SHSKEDSETGETGADDAAAATEETPSVIVTAL 135


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 354 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 449
           R  GR   +    LV  L++ CRP D   PFG
Sbjct: 31  RYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFG 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,371,878
Number of Sequences: 37544
Number of extensions: 348201
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)