Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j16
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    24   4.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   4.0  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    24   4.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    23   7.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    23   9.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    23   9.3  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 232 NPLHVFVYVQYLSIG---YILIHLPET*NSDKSNRISISTFTVIPYI 101
           NPL VF+Y+  ++IG   + +     T      + IS+ T  ++PYI
Sbjct: 77  NPLVVFLYLALITIGIASFFIYGSSLTQKFSIIDWISVLTSVLLPYI 123


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 21  PRTHCCLTGIKNRS*FILIVALWCCTI 101
           PRT   L    NR  F+ IVALW   I
Sbjct: 260 PRTMSYLRHSWNRVDFVAIVALWISVI 286


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   QDFESASYTLLFDGNKKSKLIYFNCGIVVLYHN 103
           +D E A+ TLL        +I  NCG +V  +N
Sbjct: 63  RDLEQANKTLLEQNEDIKFIILLNCGTMVDLNN 95


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 5   QDFESASYTLLFDGNKKSKLIYFNCGIVVLYHNIWYNSKSTYTNSVAFIGISSFRQMY 178
           +D E     +L    K+SKL  F   I  ++H+I Y +     N  AF GIS+    Y
Sbjct: 264 EDDELFQNYVLQQTRKESKLWSF---IKKVFHDIKYANYRLLHNLRAFPGISAISSSY 318


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
          Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 11 FESASYTLLFDGNKK 55
          FE+ASY   FDG+++
Sbjct: 14 FEAASYPFQFDGSRR 28


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 142 CFYRNFKFPANVLRCN 189
           C + NF+  +N LRCN
Sbjct: 568 CGFTNFRRRSNCLRCN 583


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 256 LVHYYLAANPLHVFVYVQYLSIGYILIHLP--ET*NSDKSNRI-SISTFTVIPYIMVQHH 86
           ++ Y+LA  P  +F     +++   L+H P  E  +SD   RI ++ T   +  +   H 
Sbjct: 248 ILAYFLANAPAPIFRIFDRVALEATLLHYPDYERIHSDIHVRITNLPTCFTLRDLRQSHL 307

Query: 85  NATIKIN 65
           N  ++++
Sbjct: 308 NCLVRVS 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,031,057
Number of Sequences: 5004
Number of extensions: 16932
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)