Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j16
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    27   2.6  
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...    27   2.6  
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995...    26   6.1  
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254...    25   8.0  
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572...    25   8.0  
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    25   8.0  

>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 217 FVYVQYLSIGYILIHLPE 164
           +  +  +S+GY+L+HLPE
Sbjct: 635 YAKISIISVGYLLLHLPE 652


>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 178 LRCNQWINIVR 210
           LRCNQW N+VR
Sbjct: 155 LRCNQWCNVVR 165


>06_02_0164 +
           12498614-12498699,12498806-12498842,12499388-12499544,
           12499964-12500181,12500965-12501891
          Length = 474

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  CCLTGIKNRS*FILIVALWCCTIIYGI 113
           C +T ++     + +V +W C+I+Y +
Sbjct: 212 CTVTQVEEAKCVVSMVPIWICSIVYSV 238


>05_01_0322 -
           2538320-2538742,2539349-2539521,2539764-2539854,
           2540005-2540121,2540327-2540392,2540933-2541025,
           2541661-2541721,2542634-2542707,2542782-2542848,
           2543342-2543400
          Length = 407

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 247 YYLAANPLHVFVYVQYLSI 191
           Y L A+PLH+++ V Y ++
Sbjct: 30  YRLCAHPLHIWIVVDYTTV 48


>02_05_0523 -
           29755007-29755856,29756381-29756940,29757058-29757275,
           29757941-29758067
          Length = 584

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  CCLTGIKNRS*FILIVALWCCTIIYGI 113
           C +T ++     + ++ +W CTI+Y +
Sbjct: 328 CTVTQVEEVKCILKMLPIWLCTIVYSV 354


>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  CCLTGIKNRS*FILIVALWCCTIIYGI 113
           C +T ++     + ++ +W CTI+Y +
Sbjct: 373 CTVTQVEEVKSILRLLPIWLCTILYSV 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,125,737
Number of Sequences: 37544
Number of extensions: 90271
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)