Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j16
         (295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical ...    27   3.1  
Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical
           protein ZC132.4 protein.
          Length = 831

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = +1

Query: 139 CCFYRNFKFPAN-----VLRCNQWINIVRRQRHEEDW 234
           C FYR +  P       +++CN+WI  V  +    +W
Sbjct: 206 CLFYRIYAVPTTNDSFEIMKCNEWIEKVHLKVSITEW 242


>Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical
           protein M176.2 protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 214 VYVQYLSIGYILIHLPET*NSDKSNRISISTFTVIPYIMVQHHN 83
           V + Y   GY   H P T   +   R+ +ST    P+I +Q  N
Sbjct: 275 VAIVYFRAGYSPDHYPSTKEWEARERMELSTAIKTPWIGLQVAN 318


>Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical
           protein R07B7.12 protein.
          Length = 550

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  YHNIWYNSKSTYTNSVAFIGISSFRQMY 178
           YH+I+Y  +  +   ++ I   SFR ++
Sbjct: 336 YHSIFYGKRDVFVEKISSIEDFSFRHLF 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,644,812
Number of Sequences: 27780
Number of extensions: 91517
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)