Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20j07
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 27 0.78
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 1.0
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 1.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 3.1
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 3.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 24 5.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 23 7.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 23 7.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 23 9.6
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 23 9.6
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 23 9.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 23 9.6
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 23 9.6
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 23 9.6
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 23 9.6
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 0.78
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 4/22 (18%)
Frame = -2
Query: 165 NIWFRIR----RQNEGNSCVYR 112
N++F +R RQNEGN+C Y+
Sbjct: 32 NVYFSLRILLNRQNEGNNCKYK 53
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 51 ESFGVRRTFVQFVQNYFQDNSGKHRNFLRFDGVS 152
+ +GV T + N F+D S KH+N + G++
Sbjct: 37 QKYGVHATIDEIEHNTFKDFSEKHKNHGKKSGLN 70
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 ILNESFGVRRT-FVQFVQNYFQDNSGKHRNFLRFDGVSE 155
+L + G ++ F QF Q Y +D + H N R+ +SE
Sbjct: 79 LLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSE 117
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 64 YGGHLYNS-CRIIFKTTPVNTGIS 132
Y H +NS +IF P+NTG S
Sbjct: 651 YNPHSWNSNASVIFLDQPINTGFS 674
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 24.6 bits (51), Expect = 3.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 272 FTILAAFISPVSTFVFPVNSLLW 204
+ ILA + P+ F P+ +++W
Sbjct: 118 YVILACVLIPLGLFASPIETIIW 140
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 78 VQFVQNYFQDNSGKHRNFLRFD 143
+ F+ NYF NS LRFD
Sbjct: 310 LSFIWNYFDANSNAFSWLLRFD 331
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 129 NSCVYRSCLENNSARIVQMSSVRQMIHLELINLLSKRNRNI 7
NS VY L N+S V S++ ++H+ +SKR + +
Sbjct: 117 NSTVYLEYLLNSSVLEVIDSTLALLLHIVQKATISKRGKQL 157
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 23.4 bits (48), Expect = 7.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 285 NVSIIYNIGCFHQSSFYLRVSCK--*SFMEFNWLHNWRPFRPNIW 157
+VS N+G + SSF R+ CK + + F + + P+ N W
Sbjct: 50 SVSENENVGKYASSSFAERIFCKNCGTTLYFAYTNGKNPYFINAW 94
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 118 NTGISFV-LTAYPKPYVRSERP 180
N GI F YP+PYV SE P
Sbjct: 477 NFGIDFWDQVEYPQPYVASEWP 498
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 183 WRPFRPNIWFRIR 145
W P+RPN++ IR
Sbjct: 44 WGPYRPNLYVGIR 56
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = +1
Query: 106 TTPVNTGISFVLTAYPKPYVRSERPPVMEPIELHKRLFTGNTKVETGLMKA 258
TTP+ +++ P ++ ++ + K +++G+T+ L+KA
Sbjct: 537 TTPLQLTSDLSISSVPSIHINDSYSCIISHTKYGKLVYSGDTRPNEKLVKA 587
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 128 FPSF*RRIRNHMLGLNGLQLWSQLNSIKDYL 220
FP RR+ + LG L Q ++ DYL
Sbjct: 735 FPYLARRVLKYKLGQASLLSLKQYTTLSDYL 765
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 45 LNESFGVRRTFVQFVQNYFQDNSGKHRNFLR 137
L+ + + F+QF++ + DN +R LR
Sbjct: 24 LDSNVSHEKNFIQFIEEFVIDNDFIYRTQLR 54
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 20 RFDNKLINSK*IIWRTEDICTIRAELFSRQ 109
RFD+ L ++ I+ + TIR+ LFS++
Sbjct: 448 RFDSLLARNRGDIFSNRNHATIRSALFSQR 477
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 167 GLNGLQLWSQLNSI 208
GLN L+LWS+L ++
Sbjct: 220 GLNVLELWSELQTL 233
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 218 NSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVVLKIILHELYK 75
N+L++ S +ITG +DL + T IP + ++I +HE K
Sbjct: 182 NTLVYESRETITGEDNDLGEIYVRYEHTVPIPRGADLYVQIDMHEYRK 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,922
Number of Sequences: 5004
Number of extensions: 25874
Number of successful extensions: 66
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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