Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20j07
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 27 2.7
12_02_1242 + 27292900-27293309,27294806-27295103 26 4.7
08_02_0018 - 11267949-11268095,11268171-11268260,11269180-112692... 26 4.7
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 26 4.7
11_06_0271 - 21804629-21805836,21805997-21806015 26 6.3
01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043... 26 6.3
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 25 8.3
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211... 25 8.3
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 194 GSITGGRSDLTYGFGYAVKTKEIPVFTGVVLKIILHELYKCP 69
GS GRS + Y GYAV+T VF G L I H++ P
Sbjct: 66 GSAAAGRSMVKYEGGYAVET----VFDGSKLGIEPHDVEVTP 103
>12_02_1242 + 27292900-27293309,27294806-27295103
Length = 235
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = -2
Query: 252 HQSSFYLRVSCK*SFMEFNWLHNWRPFRPNIWFRIRRQNEGNSCVYRSCLENNSARIVQM 73
H +F R S + ++++ L P P + + ++ N V + ENN R +++
Sbjct: 99 HFQNFMARPSPRLKDLDWDVLRLPPPTVPQLMAPLPKRRRKNRTVNDAISENNWIRDIEI 158
Query: 72 SSVRQMIHLE 43
S + + HL+
Sbjct: 159 SRITEASHLQ 168
>08_02_0018 -
11267949-11268095,11268171-11268260,11269180-11269298,
11269386-11269488,11269595-11269691,11269800-11269863,
11269955-11270087,11270176-11270423,11270527-11270685,
11271396-11271570
Length = 444
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 132 GNSCVYRSCLENN-SARIVQMSSVRQMIHLELINLL 28
G CVYR+CL+ A + +++ RQ + E N L
Sbjct: 162 GFGCVYRACLDRGVVAAVKKLNCCRQEVEKEFENEL 197
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 60 GVRRTFVQFVQNYFQDNSGKHRNF 131
G RR+F+Q + F+ + KH +F
Sbjct: 305 GARRSFIQHFNHEFEQDETKHNSF 328
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 60 GVRRTFVQFVQNYFQDNSGKHRNF 131
G + FV FV Y+Q +G H +F
Sbjct: 347 GAKGDFVYFVSGYWQHATGVHHSF 370
>01_05_0315 +
20803035-20803154,20803235-20804089,20804171-20804350,
20805191-20805286,20805895-20806179
Length = 511
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 12 FCFVSIIN*LILNES--FGVRRTFVQFVQNYFQDNSGKHRNFLRFDGVS 152
F S L+LN S G+R F + F D +G H L+ D V+
Sbjct: 137 FAIASKARVLVLNFSPYIGLRENSYSFPCHLFNDRNGSHFKVLQLDTVT 185
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 248 SPVSTFVFPVNSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVVLK 99
SP+S F F V S ++ GS +GGR + +YG G A ++ + G K
Sbjct: 95 SPLSNF-FGVLSPVF---GSSSGGRKEKSYGRGAAAAIEDSSIDIGDFFK 140
>02_01_0315 -
2111095-2111241,2111496-2111579,2111803-2111883,
2112133-2112310,2112447-2112623,2112688-2112734,
2112845-2112901,2113339-2113437,2113696-2113818,
2113895-2114017,2114241-2114264,2115096-2115209,
2115315-2115503,2115691-2115857,2116846-2116930,
2117698-2117778,2118239-2118424,2119266-2119314,
2119777-2119810,2120087-2120153,2120198-2120419
Length = 777
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 155 NHMLGLNGLQLWSQLNSIKDYL 220
NHM G NG QLW +++ L
Sbjct: 403 NHMKGYNGSQLWDTAFTVQAIL 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,828,370
Number of Sequences: 37544
Number of extensions: 147361
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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