Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20j07
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.067
AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical ... 30 0.35
Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical pr... 29 0.82
Z50742-1|CAA90614.2| 605|Caenorhabditis elegans Hypothetical pr... 27 3.3
AF040653-11|AAB95030.1| 332|Caenorhabditis elegans F-box b prot... 27 3.3
AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-l... 26 4.4
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 26 4.4
AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensor... 26 4.4
Z81570-6|CAB04607.2| 725|Caenorhabditis elegans Hypothetical pr... 26 5.8
AY887911-1|AAX34423.1| 737|Caenorhabditis elegans anion transpo... 26 5.8
AL023835-7|CAA19482.1| 175|Caenorhabditis elegans Hypothetical ... 26 5.8
AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a prot... 26 5.8
Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 25 7.6
>Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical
protein R04D3.8 protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.067
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -3
Query: 269 TILAAFISPVSTFVFPVNSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVF-----TGVV 105
TIL + IS + T F + +L W+ + SIT + L + + + TK++ +F G V
Sbjct: 101 TILLSGISLIVTLYFKLMTLRWTKVSSITMILTFLAFHIPFFLSTKQLSLFLLLVDLGFV 160
Query: 104 LKIILHELY 78
+ +IL Y
Sbjct: 161 IYLILTVAY 169
>AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical
protein T15B7.11 protein.
Length = 355
Score = 29.9 bits (64), Expect = 0.35
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 242 VSTFVFPVNSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVVLKII 93
VST + PVN + + G + SD + +G + K + VF G+ K+I
Sbjct: 173 VSTLIVPVNEVKKTDDGEVYIDTSDFSLAYG-CLLMKIVLVFVGICFKLI 221
>Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical
protein ZK287.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 184 LEAVQT*HMVSDTPSKRRKFLCLPEL 107
L+ T H + TPSKRR F+ L EL
Sbjct: 394 LDLTATPHKIRSTPSKRRSFIDLHEL 419
>Z50742-1|CAA90614.2| 605|Caenorhabditis elegans Hypothetical
protein K09A11.1 protein.
Length = 605
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 127 ISFVLTAYPKPYVRSERPPVM 189
IS + +PK YV E PPVM
Sbjct: 39 ISHLTRVHPKEYVLQEEPPVM 59
>AF040653-11|AAB95030.1| 332|Caenorhabditis elegans F-box b protein
protein 46 protein.
Length = 332
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 136 VLTAYPKPYVRSERPPVMEPIELHKRLFTGNTKVE 240
VL+ K +VR V + I +H RLF+G+ KVE
Sbjct: 34 VLSVRTKKFVRQFS--VFKNIRMHIRLFSGSVKVE 66
>AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-like
protein MEC-6 protein.
Length = 377
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 168 PNIWFRIRRQNEGNSCVYRSCLENNSARIVQMSSV 64
P+ RIR Q EGNS V N+ A I SSV
Sbjct: 316 PSQILRIRIQEEGNSWVTTEPYANDGATISASSSV 350
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -2
Query: 153 RIRRQNEGNSCVYRSCLENNSA---RIVQMSSVRQMIHLELINLLSKRNRNIT 4
R R N GNSC Y S L+ S+ +V+ ++ +M+ ++ L + N N T
Sbjct: 33 RKRLVNTGNSCYYNSTLQAMSSCGPMVVRCENLYRMVRYKIRFLDNSLNINQT 85
>AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensory
abnormality protein6 protein.
Length = 377
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 168 PNIWFRIRRQNEGNSCVYRSCLENNSARIVQMSSV 64
P+ RIR Q EGNS V N+ A I SSV
Sbjct: 316 PSQILRIRIQEEGNSWVTTEPYANDGATISASSSV 350
>Z81570-6|CAB04607.2| 725|Caenorhabditis elegans Hypothetical
protein K12G11.2 protein.
Length = 725
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 218 NSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPV 120
NSL +G IT G + G YA+ +++ P+
Sbjct: 87 NSLTSDVVGGITVGVLQIPQGIAYAILSRQDPI 119
>AY887911-1|AAX34423.1| 737|Caenorhabditis elegans anion
transporter SULP-5 protein.
Length = 737
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 218 NSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPV 120
NSL +G IT G + G YA+ +++ P+
Sbjct: 99 NSLTSDVVGGITVGVLQIPQGIAYAILSRQDPI 131
>AL023835-7|CAA19482.1| 175|Caenorhabditis elegans Hypothetical
protein Y37A1B.7 protein.
Length = 175
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 203 SSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVV 105
+++ + GGRS T F TK +PV+T V
Sbjct: 95 AAVYGMVGGRSVFTCEFYEKFNTKSVPVYTTYV 127
>AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a protein
protein 50, isoforma protein.
Length = 311
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 59 WRTEDICTIRAELFSRQLR*TQEFPSF 139
W+ +ICTIR +F ++ F SF
Sbjct: 196 WKNAEICTIRYSIFGAKIAHFFHFKSF 222
>Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical
protein T01B7.6 protein.
Length = 765
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -3
Query: 206 WSSIGSITGGRSDLTYGFGYAVKTKEIPVF 117
WSS+ + T G + F Y ++P++
Sbjct: 656 WSSLEAATNGNNPFNSSFSYGFPHMDLPIY 685
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 111 SCLENNSARIVQMSSVRQMIHL----ELINLLSKR 19
SC+EN R+ QM + ++H ELIN R
Sbjct: 1261 SCVENGEFRLAQMCGLHIVVHADELEELINFYQDR 1295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,140,845
Number of Sequences: 27780
Number of extensions: 140035
Number of successful extensions: 411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -