Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j06
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    28   1.0  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   5.5  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   5.5  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.5  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   7.3  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   9.6  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    25   9.6  

>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -2

Query: 442 TCNILRCSKDYWCFLWTLVDPFQKV*LMNPDAKILQACDKIMRRNVKATQIKTISTRSNW 263
           T  + RC  D+  F+ ++VDP     ++    KI ++  K + ++ ++T +     R NW
Sbjct: 238 TMLLCRCDTDHAEFITSVVDPRDHAYVLGATTKI-ESLIKAL-KDAESTGVSMKKARENW 295

Query: 262 LQIA 251
           ++ A
Sbjct: 296 IERA 299


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 258 CSQFDLVEIVFICVAFTFLLIILSQACRIL 347
           C++FD   I+ +  A +F+L+ILS  C  L
Sbjct: 237 CAEFDTSPIL-LSYALSFILMILSHICNSL 265


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 491 SITATAIQAISSKPIFDVQHIEVQQGLLVLSVDACGSISKGVV 363
           S  A+++ ++ ++ I  + HI +   LL ++V  CG I+  +V
Sbjct: 147 STFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIV 189


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 519 VGLGHDDQDEYHCNSYTGD 463
           VGLG   Q   HCN   GD
Sbjct: 434 VGLGAGQQSRIHCNRLAGD 452


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 301 ATQIKTISTRSNWLQIADFGGNSGLVILC 215
           A+  KT++ + NW+    +G N  L I C
Sbjct: 136 ASSHKTVTKKHNWMLRLYYGNNKVLFIFC 164


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 425 VQQGLLVLSVDACGSISKGVVDES 354
           + +G L+  +DA G +  GV DES
Sbjct: 64  IGKGTLMREIDALGGVVSGVCDES 87


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 117 QPFLITFLSYFVNIDNFFYTEN 52
           QP   TF   + NI+ FF TEN
Sbjct: 357 QPRKHTFYQMYENIEKFFTTEN 378


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 12  QLFDIFHQES--SQMNFLCKKNYQY*QN 89
           Q+FD  +Q+    ++NF C   YQY  N
Sbjct: 34  QIFDSIYQDIPLKKVNFECNNEYQYINN 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,642
Number of Sequences: 5004
Number of extensions: 49617
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)