Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j03
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   0.52 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   2.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   2.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    24   3.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    23   4.9  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    23   6.4  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    23   8.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   8.5  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    23   8.5  

>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 182 HRQNPTEFLCEHYFLSFS*ILRPISVRRNLYRHRQSFLQ 66
           H  NP++ L EH F++   I   + ++  L+R  ++  Q
Sbjct: 186 HSHNPSQLLFEHPFMALGLIFGSVVLKEWLFRKTRTVAQ 224


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 185 EHRQNPTEFLCEHYFLSFS*ILRPISVRRNLYRHRQSFLQSPRPL 51
           E+ ++ T      + L  + ++R ISVR   +RH  +F++  + L
Sbjct: 49  ENLEDLTLLKTSAFELKLNELIREISVRGKYFRHANTFVEKIKDL 93


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 95  LYRHRQSFLQSPRPLNKYLIFEIL 24
           LYR  Q+F  S    NK L+ ++L
Sbjct: 646 LYRRNQAFQYSSTVTNKQLVLQVL 669


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 230 KEYLKKTTK*YILIFEHRQNPTEFLCEHYF 141
           KE LKK  + Y   F    NPT   C  YF
Sbjct: 402 KELLKKQHEAYAYPFYKPVNPTACGCPDYF 431


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 181 IVKTLQSFYVNTIFYHFHKFFDRY 110
           ++  L  F++ TI YH H    RY
Sbjct: 33  VIGKLNRFFMVTIPYHLHVLDSRY 56


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 210 YKIVHFNF*TSSKPYRVSM*TLFFIIFINS 121
           +KI H N  T +  + +S    FFI+F+ S
Sbjct: 252 FKIFHDNDNTKACNWTISRLRYFFIVFVAS 281


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 190 FLNIVKTLQSFYVNTIFYHFHKFFDRY 110
           F +I+   +S     I YHF +FF +Y
Sbjct: 184 FKSILLNHKSQVAEFISYHFDEFFKQY 210


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 187 LNIVKTLQSFYVNTIFYHFHK 125
           +N  + L  FY + +  HFHK
Sbjct: 105 INPYQNLPEFYNDNLIKHFHK 125


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 154 VNTIFYHFHKFFDRYQSVEIFIGIVNHFFNL 62
           + ++F     F DRY    +++G+V+ F  L
Sbjct: 399 IGSVFSLQPYFRDRYFKNHVYLGVVDKFHKL 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 904,450
Number of Sequences: 5004
Number of extensions: 14778
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)