Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20j03
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0645 - 23899579-23904483 28 0.90
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 26 3.6
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376... 26 4.8
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 25 8.4
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 25 8.4
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 25 8.4
08_02_0010 - 11230407-11232416 25 8.4
08_02_0009 + 11216532-11218687,11220727-11225998 25 8.4
08_02_0006 + 11204835-11206382 25 8.4
08_02_0003 + 11180421-11180757,11180773-11185715 25 8.4
08_02_0002 + 11173365-11173512,11173528-11178470 25 8.4
08_01_1086 - 11150017-11151564 25 8.4
02_02_0537 + 11308195-11309667 25 8.4
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + +HKF +R ++IF+G+ ++FF+LL
Sbjct: 1350 QTLSCFGQDILDLVWHKFKER--QMKIFLGLQDYFFDLL 1386
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 151 NTIFYHFHKFFDRYQSVEIFIGIVNHFFNLLVR*IST*YLRYFLD 17
+T F +KFF +V+ G++ H + +R I YLRY D
Sbjct: 63 STAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVAD 107
>12_02_0093 +
13536684-13536782,13537055-13537057,13537626-13537654,
13539481-13539572,13539979-13540049,13540178-13540266,
13540896-13541019,13541111-13541394,13541831-13541960,
13542482-13543111
Length = 516
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 98 FDGLISVEEFMKMIKNSVHIET 163
F G+ V F+K +K+ VHI T
Sbjct: 130 FPGIYDVPHFLKTLKHDVHIVT 151
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 1221 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 1257
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 832 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 868
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 1073 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 1109
>08_02_0010 - 11230407-11232416
Length = 669
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 385 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 421
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 2191 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 2227
>08_02_0006 + 11204835-11206382
Length = 515
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 231 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 267
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 1475 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 1511
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 1412 QTLSCFGQDILDLIWQKFKER--QMKIFLGLQDYFFDLL 1448
>08_01_1086 - 11150017-11151564
Length = 515
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 231 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 267
>02_02_0537 + 11308195-11309667
Length = 490
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 175 KTLQSFYVNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLL 59
+TL F + + + KF +R ++IF+G+ ++FF+LL
Sbjct: 231 QTLSCFGQDILDLVWQKFKER--QMKIFLGLQDYFFDLL 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,557,651
Number of Sequences: 37544
Number of extensions: 62598
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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