Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j03
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l...    26   4.3  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    26   4.3  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    26   4.3  
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p...    26   4.3  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    25   9.8  

>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
           lineage protein 49 protein.
          Length = 1042

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 251 FLMVI*CKEYLKKTTK*YILIFEHRQNPTEFLCE 150
           F M++  +E  K     YI +FE    PTE LC+
Sbjct: 486 FDMIVRREERKKDMLNSYIRMFERGFKPTELLCQ 519


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 175 KTLQSFY--VNTIFYHFHKFFDRYQSVEIFIGIVNHFFNLLVR 53
           K+LQS Y  +  +    H F   Y+S+ +  GIV  F++  +R
Sbjct: 40  KSLQSKYGYILGVLASIHSFCLLYESINMTFGIVATFYHYQIR 82


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 160 FYVNTIFYHFHKFFDRYQSVEIFIGIVNH 74
           FYV   F    KF  RYQ + +F G+++H
Sbjct: 15  FYVQCFF--IFKF--RYQCINLFFGVISH 39


>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
           protein LIN-49 protein.
          Length = 1042

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 251 FLMVI*CKEYLKKTTK*YILIFEHRQNPTEFLCE 150
           F M++  +E  K     YI +FE    PTE LC+
Sbjct: 486 FDMIVRREERKKDMLNSYIRMFERGFKPTELLCQ 519


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 233 CKEYLKKTTK*YILIFEHRQNPTEFLCEHY 144
           C E+ K + K + LIFE   N TE     Y
Sbjct: 106 CVEFEKNSNKKFELIFEQSLNDTEIKWTKY 135


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 133 FHKFFDRYQSVEIFIGIVNHF 71
           F+ FF+ +  V IFI IV++F
Sbjct: 4   FYDFFEVFTKVPIFITIVSNF 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,847,179
Number of Sequences: 27780
Number of extensions: 80776
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)