Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j03
         (256 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   7.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   7.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   9.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   9.6  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 249 FNGNLV*RIFKKNYKIVHFN 190
           +N N   +++  NYK +++N
Sbjct: 91  YNNNNYKKLYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 249 FNGNLV*RIFKKNYKIVHFN 190
           +N N   +++  NYK +++N
Sbjct: 91  YNNNNYKKLYCNNYKKLYYN 110


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 139 YHFHKFFDRYQSVEI 95
           +HF+++  R + +EI
Sbjct: 27  FHFNRYLTRRRRIEI 41


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 100 EIFIGIVNHF 71
           + FIGIVN F
Sbjct: 477 DAFIGIVNQF 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,633
Number of Sequences: 438
Number of extensions: 1007
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)