Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j02
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    30   0.30 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   4.9  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   4.9  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.5  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    25   6.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.5  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   6.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.6  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 252 MASPNPEIDLSSMFISKVNNSKSPTRSEPTSRRNSTVKSSLPAEIITVKDFF-DFMKTAY 428
           +A  N  +D SS F+SKVN   +  R+  +++ N ++  S P+EI  +  F     +   
Sbjct: 101 IALGNDNVD-SSAFLSKVNKGVNAMRNSTSNQTNDSILIS-PSEITNMDPFLKGSARWTA 158

Query: 429 QVYEYLE 449
           + ++YLE
Sbjct: 159 EHWDYLE 165


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 297 SKVNNSKSPTRSEPTSRRNSTVKSSL---PAEIIT-VKDFFDFMKTAYQVYEYLEGD 455
           +KV N +S T+ EP  + N   +S+L   PA  ++ V+  +DF  T      + +GD
Sbjct: 185 NKVENPQS-TKDEPLQKTNQRQESNLATSPASTVSRVRALYDFAATEQGELSFKKGD 240


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +3

Query: 474 IDWEELTKLTVLNHVIEQQERDLLLQTAFSEQKPITSKSET 596
           + W+++T L   +  +++ + D L+Q   S+ + + + SET
Sbjct: 647 VSWKQVTDLLYSHLSLKEGQDDSLIQQIISDPETVKTLSET 687


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 453 DEDDGSKIDWEELTKLTVLNHVIEQQERD 539
           D  +G K+DW+E   LTV     +Q+ ++
Sbjct: 242 DHAEGDKVDWKENADLTVRTVTKKQRNKN 270


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 438 EYLEGDEDDGSKIDWEEL 491
           E LEGDE+DGS  D ++L
Sbjct: 129 ENLEGDEEDGSFSDLKDL 146


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 240 ILKTITTGIETTKNGLIKQ 184
           ILKT   GI+T  NGL+ Q
Sbjct: 74  ILKTTQEGIQTAMNGLLDQ 92


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 441  YLEGDEDDGSKIDWEELTKLTVLNHVIEQQERDLLLQ 551
            YL+GDE+D ++ + +E  K+  L    E++++ LL +
Sbjct: 956  YLDGDENDNAEAETKE--KMDELQARCEKEQQSLLAE 990


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 414 MKTAYQVYEYLEGDEDDGSKIDWEELTKLTVLNHVIEQQER--DLLLQTAFSEQKPITSK 587
           +K+ Y V +YL     DGS   W++   L V+ H I +  R   ++   A S  +P   +
Sbjct: 242 VKSVYPVDDYLITASSDGSVCIWDKDWNL-VIEHNIPEGNRITCMVAMLADSNSEPKNVE 300

Query: 588 SETA 599
            E A
Sbjct: 301 DEAA 304


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 276 DLSSMFISKVNNSKSPTRSEPTSRRNSTVKSSLPAE 383
           ++SS F +    SK P+ S+ TSR     K+  P++
Sbjct: 147 NVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSD 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,196
Number of Sequences: 5004
Number of extensions: 38891
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)